v0.6.0

Overview

This version modernizes most of the codebase, including a refactor to ensure compatibility with Python 3.9

What's Changed

• Update to Python 3.9
• Includes a pyproject.toml file for use with poetry (removal of setup.py)
• Now relies on gensim = ^4.3.0
• Replaces flake8 with ruff
• Replacement of unittest with pytest
• Removal of CLI test workflow
• Replacement of scipy.stats.truncnorm function with custom truncated normal-simulation functions
• Addition of docstrings and type-hinting
• More flexible versioning for fire, networkx, numpy, pandas, scipy than v0.5.4

Known Issues

• phenopy v0.6.0 relies on Python3.9, which is expected to reach end-of-life on 2025-10-05.

Compatibility

Requires >= Python 3.9.

Contributors

• Stephen McGee (@mcgeestephen)

Release Date

Version 0.6.0 was released on June 16, 2023.