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21 Open 17 Closed
21 Open 17 Closed
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Issues list

Incompatibility between modisco with ISM and Specificify transform with subtract function
#80 opened Nov 8, 2024 by dagarfield
1
Loading custom models
#76 opened Oct 22, 2024 by saninta0212
1
Questions about the acceptable sequence length of borzoi
#72 opened Oct 21, 2024 by HelloWorldLTY
3
Update motifs in resources enhancement New feature or request
#70 opened Oct 17, 2024 by avantikalal
@avantikalal
Support indels enhancement New feature or request
#65 opened Oct 15, 2024 by avantikalal
@avantikalal
Add a function to plot motif logos enhancement New feature or request
#62 opened Oct 15, 2024 by avantikalal
@avantikalal
Add attribution score for motif hits enhancement New feature or request
#60 opened Oct 14, 2024 by avantikalal
@avantikalal
Check chromosomes when fine tuning? enhancement New feature or request
#59 opened Oct 14, 2024 by avantikalal
@avantikalal
Remove pretrainedmodel classes enhancement New feature or request
#58 opened Oct 14, 2024 by avantikalal
@avantikalal
Save gReLU version in checkpoints enhancement New feature or request
#57 opened Oct 14, 2024 by avantikalal
@avantikalal
Enable deepshap for enformer models enhancement New feature or request
#56 opened Oct 14, 2024 by avantikalal
@avantikalal
Automatically catch intervals which extend beyond the chr? enhancement New feature or request
#54 opened Oct 10, 2024 by cafletezbrant
@avantikalal
1
How to change the location of genome downloading path? question Further information is requested
#52 opened Oct 5, 2024 by HelloWorldLTY
guidelines to implement custom models enhancement New feature or request
#47 opened Sep 19, 2024 by MiqG
1
Questions about reading variants
#45 opened Sep 12, 2024 by HelloWorldLTY
3
Making train_params and model_params functional to add documentation and avoid duplication enhancement New feature or request
#38 opened Aug 5, 2024 by gokceneraslan
@avantikalal
6
Update doc string and input allowances for grelu.sequence.utils.resize bug Something isn't working documentation Improvements or additions to documentation
#34 opened Jul 26, 2024 by dagarfield
@avantikalal
Ref and alt reversed in VEP tutorial
#33 opened Jul 26, 2024 by dagarfield
Loading models from the checkpoint leads to package version conflicts
#28 opened Jul 19, 2024 by MuhammedHasan
@ekageyama
wrong input file pointed by the tutorial 3_train.ipynb
#24 opened Jul 17, 2024 by mhfzsharmin
4
Training with poisson_multinomial + label preprocessing
#17 opened Jul 12, 2024 by fteufel
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