Add the Session.virtualfile_from_stringio method to allow StringIO input for certain functions/methods #11436
Workflow file for this run
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| # Build and deploy documentation | |
| # | |
| # This workflow builds the documentation on Linux/macOS/Windows. | |
| # | |
| # It is run on every commit to the main and pull request branches, and also | |
| # when a new release is published. | |
| # In draft pull requests, only the job on Linux is triggered to save on | |
| # Continuous Integration resources. | |
| # | |
| # On the main branch, the workflow also handles the documentation deployment: | |
| # | |
| # * Updating the development documentation by pushing the built HTML pages | |
| # from the main branch onto the dev folder of the gh-pages branch. | |
| # * Updating the latest documentation link to the new release. | |
| # | |
| name: Docs | |
| on: | |
| push: | |
| branches: [ main ] | |
| paths: | |
| - 'pygmt/**/*.py' | |
| - '!pygmt/tests/**' | |
| - 'doc/**' | |
| - 'examples/**' | |
| - 'README.md' | |
| - '.github/workflows/ci_docs.yml' | |
| pull_request: | |
| types: [opened, reopened, synchronize, ready_for_review] | |
| paths: | |
| - 'pygmt/**/*.py' | |
| - '!pygmt/tests/**' | |
| - 'doc/**' | |
| - 'examples/**' | |
| - 'README.md' | |
| - '.github/workflows/ci_docs.yml' | |
| workflow_dispatch: | |
| release: | |
| types: | |
| - published | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ github.ref != 'refs/heads/main' }} | |
| jobs: | |
| docs: | |
| name: ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| if: github.repository == 'GenericMappingTools/pygmt' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| # Is it a draft Pull Request (true or false)? | |
| isDraft: | |
| - ${{ github.event.pull_request.draft }} | |
| # Only run one job (Ubuntu + Python 3.12) for draft PRs | |
| exclude: | |
| - os: macos-latest | |
| isDraft: true | |
| - os: windows-latest | |
| isDraft: true | |
| timeout-minutes: 30 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| # Checkout current git repository | |
| - name: Checkout | |
| uses: actions/[email protected] | |
| with: | |
| # fetch all history so that setuptools-scm works | |
| fetch-depth: 0 | |
| - name: Get current week number of year | |
| id: date | |
| run: echo "date=$(date +%Y-W%W)" >> $GITHUB_OUTPUT # e.g., 2024-W19 | |
| # Install Micromamba with conda-forge dependencies | |
| - name: Setup Micromamba | |
| uses: mamba-org/[email protected] | |
| with: | |
| environment-name: pygmt | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - nodefaults | |
| cache-downloads: false | |
| cache-environment: true | |
| # environment cache is persistent for one week. | |
| cache-environment-key: micromamba-environment-${{ steps.date.outputs.date }} | |
| create-args: >- | |
| python=3.12 | |
| gmt=6.5.0 | |
| ghostscript=10.03.1 | |
| numpy | |
| pandas | |
| xarray | |
| netCDF4 | |
| packaging | |
| contextily | |
| geopandas<1.0 | |
| ipython | |
| rioxarray | |
| make | |
| pip | |
| python-build | |
| myst-nb | |
| panel | |
| sphinx | |
| sphinx-autodoc-typehints | |
| sphinx-copybutton | |
| sphinx-design | |
| sphinx-gallery | |
| sphinx_rtd_theme | |
| # Download cached remote files (artifacts) from GitHub | |
| - name: Download remote data from GitHub | |
| run: | | |
| # Download cached files to ~/.gmt directory and list them | |
| gh run download --name gmt-cache --dir ~/.gmt/ | |
| # Change modification times of the two files, so GMT won't refresh it | |
| touch ~/.gmt/gmt_data_server.txt ~/.gmt/gmt_hash_server.txt | |
| ls -lhR ~/.gmt | |
| env: | |
| GH_TOKEN: ${{ github.token }} | |
| # Install the package that we want to test | |
| - name: Install the package | |
| run: | | |
| python -m build --sdist | |
| python -m pip install dist/* | |
| # Build the documentation | |
| - name: Build the documentation | |
| run: make -C doc clean all | |
| - name: Checkout the gh-pages branch | |
| uses: actions/[email protected] | |
| with: | |
| ref: gh-pages | |
| # Checkout to this folder instead of the current one | |
| path: deploy | |
| # Download the entire history | |
| fetch-depth: 0 | |
| if: (github.event_name == 'release' || github.event_name == 'push') && (matrix.os == 'ubuntu-latest') | |
| - name: Push the built HTML to gh-pages | |
| run: | | |
| # Detect if this is a release or from the main branch | |
| if [[ "${GITHUB_EVENT_NAME}" == "release" ]]; then | |
| # Get the tag name without the "refs/tags/" part | |
| version="${GITHUB_REF#refs/*/}" | |
| else | |
| version=dev | |
| fi | |
| echo "Deploying version: $version" | |
| # Make the new commit message. Needs to happen before cd into deploy | |
| # to get the right commit hash. | |
| message="Deploy $version from $(git rev-parse --short HEAD)" | |
| cd deploy | |
| # Need to have this file so that GitHub doesn't try to run Jekyll | |
| touch .nojekyll | |
| # Delete all the files and replace with our new set | |
| echo -e "\nRemoving old files from previous builds of ${version}:" | |
| rm -rvf ${version} | |
| echo -e "\nCopying HTML files to ${version}:" | |
| cp -Rvf ../doc/_build/html/ ${version}/ | |
| # If this is a new release, update the link from /latest to it | |
| if [[ "${version}" != "dev" ]]; then | |
| echo -e "\nSetup link from ${version} to 'latest'." | |
| rm -f latest | |
| ln -sf ${version} latest | |
| fi | |
| # Stage the commit | |
| git add -A . | |
| echo -e "\nChanges to be applied:" | |
| git status | |
| # Configure git to be the GitHub Actions account | |
| git config user.email "github-actions[bot]@users.noreply.github.com" | |
| git config user.name "github-actions[bot]" | |
| # If this is a dev build and the last commit was from a dev build | |
| # (detect if "dev" was in the previous commit message), reuse the | |
| # same commit | |
| if [[ "${version}" == "dev" && `git log -1 --format='%s'` == *"dev"* ]]; then | |
| echo -e "\nAmending last commit:" | |
| git commit --amend --reset-author -m "$message" | |
| else | |
| echo -e "\nMaking a new commit:" | |
| git commit -m "$message" | |
| fi | |
| # Make the push quiet just in case there is anything that could leak | |
| # sensitive information. | |
| echo -e "\nPushing changes to gh-pages." | |
| git push -fq origin gh-pages 2>&1 >/dev/null | |
| echo -e "\nFinished uploading generated files." | |
| if: (github.event_name == 'release' || github.event_name == 'push') && (matrix.os == 'ubuntu-latest') |