Publish PyPI #9

	name: Publish PyPI

	on:
	release:
	types: [published]


	jobs:
	build:

	runs-on: ${{ matrix.os-version }}
	name: ${{ matrix.os-version }} (${{ matrix.python-version }})

	strategy:
	fail-fast: false
	matrix:
	os-version: ["ubuntu-latest"]
	python-version: ["3.11"]

	steps:
	- uses: actions/checkout@v3
	- name: "Set up Python ${{ matrix.python-version }}"
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}
	cache: 'pip'
	- name: "Install flake8"
	run: \|
	pip install flake8
	- name: "Lint with flake8"
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: "Install miniconda"
	uses: conda-incubator/setup-miniconda@v2
	with:
	miniconda-version: "latest"
	auto-update-conda: true
	mamba-version: "*"
	python-version: ${{ matrix.python-version }}
	channels: conda-forge,bioconda
	environment-file: environment.yml
	- name: "Install pytest"
	shell: bash -l {0}
	run: \|
	python -m pip install --upgrade pip
	pip install setuptools wheel build pytest
	pip install twine
	- name: "Test with pytest"
	shell: bash -l {0}
	run: \|
	pytest -s
	- name: Build package
	shell: bash -l {0}
	run: \|
	python setup.py bdist_wheel --universal
	- name: Publish package
	uses: pypa/gh-action-pypi-publish@release/v1
	with:
	user: __token__
	password: ${{ secrets.PYPI_TOKEN }}

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