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GilbertLabUCSF · Jun 26, 2024 · ef37138 · ef37138
1 parent 6c78c15
commit ef37138
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Showing 2 changed files with 8 additions and 6 deletions.
diff --git a/docs/environment.yaml b/docs/environment.yaml
@@ -3,13 +3,19 @@ channels:
   - anaconda
   - conda-forge
 dependencies:
+  - python>=3.11,<4.0
   - myst-parser=0.18.1
   - sphinx=5.3.0
   - sphinx_rtd_theme=1.1.1
   - jinja2<=3.1
   - pandas
+  - numpy
   - polars
+  - configparser
+  - requests
+  - tqdm
   - pip
   - pip:
-    - nbsphinx
-    - pycandi
+   - pydeseq2
+   - adpbulk
+   - pycandi
diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -11,13 +11,9 @@
 # documentation root, use os.path.abspath to make it absolute, like shown here.
 #
 import os
-import subprocess
 import sys
 sys.path.insert(0, os.path.abspath('../..'))
 
-# Install CanDI - download datasets
-subprocess.run('candi-install', shell=True)
-
 # -- Project information -----------------------------------------------------
 
 project = 'CanDI'