Sync develop changes April 3 - April 4 to hdf5_1_14_4 (#4324) (#4325)

* Sync develop changes April 3 - April4 to hdf5_1_14_4 via hdf5_1_14 (#4324)

* Regenerate files generated by autogen.sh after configure changes.
Set workflows to run for the hdf5_1_14_4 branch.

.github/workflows/autotools.yml

@@ -5,7 +5,7 @@ on:
   workflow_dispatch:
   push:
   pull_request:
-    branches: [ hdf5_1_14 ]
+    branches: [ hdf5_1_14_4 ]
     paths-ignore:
       - '.github/CODEOWNERS'
       - '.github/FUNDING.yml'

.github/workflows/cmake.yml

@@ -5,7 +5,7 @@ on:
   workflow_dispatch:
   push:
   pull_request:
-    branches: [ hdf5_1_14 ]
+    branches: [ hdf5_1_14_4 ]
     paths-ignore:
       - '.github/CODEOWNERS'
       - '.github/FUNDING.yml'

.github/workflows/cve.yml

@@ -4,7 +4,7 @@ on:
   workflow_dispatch:
   push:
   pull_request:
-    branches: [ hdf5_1_14 ]
+    branches: [ hdf5_1_14_4 ]
     paths-ignore:
       - '.github/CODEOWNERS'
       - '.github/FUNDING.yml'

.github/workflows/hdfeos5.yml

@@ -4,7 +4,7 @@ on:
   workflow_dispatch:
   push:
   pull_request:
-    branches: [ hdf5_1_14 ]
+    branches: [ hdf5_1_14_4 ]
     paths-ignore:
       - '.github/CODEOWNERS'
       - '.github/FUNDING.yml'

.github/workflows/markdown-link-check.yml

@@ -4,7 +4,7 @@ on:
   workflow_dispatch:
   push:
   pull_request:
-    branches: [ hdf5_1_14 ]
+    branches: [ hdf5_1_14_4 ]
 
 jobs:
   markdown-link-check:

.github/workflows/netcdf.yml

@@ -4,7 +4,7 @@ on:
   workflow_dispatch:
   push:
   pull_request:
-    branches: [ hdf5_1_14 ]
+    branches: [ hdf5_1_14_4 ]
     paths-ignore:
       - '.github/CODEOWNERS'
       - '.github/FUNDING.yml'

Makefile.in

@@ -1,7 +1,7 @@
-# Makefile.in generated by automake 1.13.4 from Makefile.am.
+# Makefile.in generated by automake 1.16.2 from Makefile.am.
 # @configure_input@
 
-# Copyright (C) 1994-2013 Free Software Foundation, Inc.
+# Copyright (C) 1994-2020 Free Software Foundation, Inc.
 
 # This Makefile.in is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -44,7 +44,17 @@
 #xxx	$(MAKE) all
 #xxx
 VPATH = @srcdir@
-am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
+am__is_gnu_make = { \
+  if test -z '$(MAKELEVEL)'; then \
+    false; \
+  elif test -n '$(MAKE_HOST)'; then \
+    true; \
+  elif test -n '$(MAKE_VERSION)' && test -n '$(CURDIR)'; then \
+    true; \
+  else \
+    false; \
+  fi; \
+}
 am__make_running_with_option = \
   case $${target_option-} in \
       ?) ;; \
@@ -107,13 +117,6 @@ PRE_UNINSTALL = :
 POST_UNINSTALL = :
 build_triplet = @build@
 host_triplet = @host@
-DIST_COMMON = $(top_srcdir)/config/commence.am $(srcdir)/Makefile.in \
-	$(srcdir)/Makefile.am $(top_srcdir)/configure \
-	$(am__configure_deps) $(top_srcdir)/doxygen/Doxyfile.in \
-	$(top_srcdir)/utils/subfiling_vfd/h5fuse.in COPYING \
-	$(top_srcdir)/bin/config.guess $(top_srcdir)/bin/config.sub \
-	$(top_srcdir)/bin/install-sh $(top_srcdir)/bin/ltmain.sh \
-	$(top_srcdir)/bin/missing
 subdir = .
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/aclocal_fc.m4 \
@@ -136,6 +139,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/aclocal_fc.m4 \
 	$(top_srcdir)/m4/lt~obsolete.m4 $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
+DIST_COMMON = $(srcdir)/Makefile.am $(top_srcdir)/configure \
+	$(am__configure_deps) $(am__DIST_COMMON)
 am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \
  configure.lineno config.status.lineno
 mkinstalldirs = $(install_sh) -d
@@ -177,7 +182,7 @@ am__recursive_targets = \
   $(RECURSIVE_CLEAN_TARGETS) \
   $(am__extra_recursive_targets)
 AM_RECURSIVE_TARGETS = $(am__recursive_targets:-recursive=) TAGS CTAGS \
-	cscope distdir dist dist-all distcheck
+	cscope distdir distdir-am dist dist-all distcheck
 am__tagged_files = $(HEADERS) $(SOURCES) $(TAGS_FILES) $(LISP)
 # Read a list of newline-separated strings from the standard input,
 # and print each of them once, without duplicates.  Input order is
@@ -198,6 +203,12 @@ am__define_uniq_tagged_files = \
 ETAGS = etags
 CTAGS = ctags
 CSCOPE = cscope
+am__DIST_COMMON = $(srcdir)/Makefile.in $(top_srcdir)/bin/compile \
+	$(top_srcdir)/bin/config.guess $(top_srcdir)/bin/config.sub \
+	$(top_srcdir)/bin/install-sh $(top_srcdir)/bin/ltmain.sh \
+	$(top_srcdir)/bin/missing $(top_srcdir)/config/commence.am \
+	$(top_srcdir)/doxygen/Doxyfile.in \
+	$(top_srcdir)/utils/subfiling_vfd/h5fuse.in COPYING
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
 distdir = $(PACKAGE)-$(VERSION)
 top_distdir = $(distdir)
@@ -685,17 +696,16 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir
 	echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign Makefile'; \
 	$(am__cd) $(top_srcdir) && \
 	  $(AUTOMAKE) --foreign Makefile
-.PRECIOUS: Makefile
 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 	@case '$?' in \
 	  *config.status*) \
 	    echo ' $(SHELL) ./config.status'; \
 	    $(SHELL) ./config.status;; \
 	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe);; \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__maybe_remake_depfiles)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__maybe_remake_depfiles);; \
 	esac;
-$(top_srcdir)/config/commence.am:
+$(top_srcdir)/config/commence.am $(am__empty):
 
 $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps)
 	$(am__cd) $(srcdir) && $(AUTOCONF)
@@ -822,7 +832,10 @@ distclean-tags:
 	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
 	-rm -f cscope.out cscope.in.out cscope.po.out cscope.files
 
-distdir: $(DISTFILES)
+distdir: $(BUILT_SOURCES)
+	$(MAKE) $(AM_MAKEFLAGS) distdir-am
+
+distdir-am: $(DISTFILES)
 	$(am__remove_distdir)
 	test -d "$(distdir)" || mkdir "$(distdir)"
 	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
@@ -887,7 +900,7 @@ distdir: $(DISTFILES)
 	  ! -type d ! -perm -444 -exec $(install_sh) -c -m a+r {} {} \; \
 	|| chmod -R a+r "$(distdir)"
 dist-gzip: distdir
-	tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
+	tardir=$(distdir) && $(am__tar) | eval GZIP= gzip $(GZIP_ENV) -c >$(distdir).tar.gz
 	$(am__post_remove_distdir)
 
 dist-bzip2: distdir
@@ -902,12 +915,22 @@ dist-xz: distdir
 	tardir=$(distdir) && $(am__tar) | XZ_OPT=$${XZ_OPT--e} xz -c >$(distdir).tar.xz
 	$(am__post_remove_distdir)
 
+dist-zstd: distdir
+	tardir=$(distdir) && $(am__tar) | zstd -c $${ZSTD_CLEVEL-$${ZSTD_OPT--19}} >$(distdir).tar.zst
+	$(am__post_remove_distdir)
+
 dist-tarZ: distdir
+	@echo WARNING: "Support for distribution archives compressed with" \
+		       "legacy program 'compress' is deprecated." >&2
+	@echo WARNING: "It will be removed altogether in Automake 2.0" >&2
 	tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z
 	$(am__post_remove_distdir)
 
 dist-shar: distdir
-	shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
+	@echo WARNING: "Support for shar distribution archives is" \
+	               "deprecated." >&2
+	@echo WARNING: "It will be removed altogether in Automake 2.0" >&2
+	shar $(distdir) | eval GZIP= gzip $(GZIP_ENV) -c >$(distdir).shar.gz
 	$(am__post_remove_distdir)
 
 dist-zip: distdir
@@ -925,7 +948,7 @@ dist dist-all:
 distcheck: dist
 	case '$(DIST_ARCHIVES)' in \
 	*.tar.gz*) \
-	  GZIP=$(GZIP_ENV) gzip -dc $(distdir).tar.gz | $(am__untar) ;;\
+	  eval GZIP= gzip $(GZIP_ENV) -dc $(distdir).tar.gz | $(am__untar) ;;\
 	*.tar.bz2*) \
 	  bzip2 -dc $(distdir).tar.bz2 | $(am__untar) ;;\
 	*.tar.lz*) \
@@ -935,22 +958,25 @@ distcheck: dist
 	*.tar.Z*) \
 	  uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
 	*.shar.gz*) \
-	  GZIP=$(GZIP_ENV) gzip -dc $(distdir).shar.gz | unshar ;;\
+	  eval GZIP= gzip $(GZIP_ENV) -dc $(distdir).shar.gz | unshar ;;\
 	*.zip*) \
 	  unzip $(distdir).zip ;;\
+	*.tar.zst*) \
+	  zstd -dc $(distdir).tar.zst | $(am__untar) ;;\
 	esac
 	chmod -R a-w $(distdir)
 	chmod u+w $(distdir)
-	mkdir $(distdir)/_build $(distdir)/_inst
+	mkdir $(distdir)/_build $(distdir)/_build/sub $(distdir)/_inst
 	chmod a-w $(distdir)
 	test -d $(distdir)/_build || exit 0; \
 	dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
 	  && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
 	  && am__cwd=`pwd` \
-	  && $(am__cd) $(distdir)/_build \
-	  && ../configure --srcdir=.. --prefix="$$dc_install_base" \
+	  && $(am__cd) $(distdir)/_build/sub \
+	  && ../../configure \
 	    $(AM_DISTCHECK_CONFIGURE_FLAGS) \
 	    $(DISTCHECK_CONFIGURE_FLAGS) \
+	    --srcdir=../.. --prefix="$$dc_install_base" \
 	  && $(MAKE) $(AM_MAKEFLAGS) \
 	  && $(MAKE) $(AM_MAKEFLAGS) dvi \
 	  && $(MAKE) $(AM_MAKEFLAGS) check \
@@ -1114,18 +1140,20 @@ uninstall-am:
 	am--refresh check check-am clean clean-cscope clean-generic \
 	clean-libtool cscope cscopelist-am ctags ctags-am dist \
 	dist-all dist-bzip2 dist-gzip dist-lzip dist-shar dist-tarZ \
-	dist-xz dist-zip distcheck distclean distclean-generic \
-	distclean-libtool distclean-tags distcleancheck distdir \
-	distuninstallcheck dvi dvi-am html html-am info info-am \
-	install install-am install-data install-data-am install-dvi \
-	install-dvi-am install-exec install-exec-am install-html \
-	install-html-am install-info install-info-am install-man \
-	install-pdf install-pdf-am install-ps install-ps-am \
-	install-strip installcheck installcheck-am installcheck-local \
-	installdirs installdirs-am maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic \
-	mostlyclean-libtool mostlyclean-local pdf pdf-am ps ps-am tags \
-	tags-am uninstall uninstall-am
+	dist-xz dist-zip dist-zstd distcheck distclean \
+	distclean-generic distclean-libtool distclean-tags \
+	distcleancheck distdir distuninstallcheck dvi dvi-am html \
+	html-am info info-am install install-am install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installcheck-local installdirs installdirs-am \
+	maintainer-clean maintainer-clean-generic mostlyclean \
+	mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \
+	pdf-am ps ps-am tags tags-am uninstall uninstall-am
+
+.PRECIOUS: Makefile
 
 
 # List all build rules defined by HDF5 Makefiles as "PHONY" targets here.