Merge pull request #4865 from HDFGroup/develop

update feature/sparse_data with develop

.github/workflows/aocc-auto.yml

@@ -74,29 +74,38 @@ jobs:
             --enable-build-mode=${{ inputs.build_mode }} \
             --enable-shared \
             --enable-parallel \
+            --enable-subfiling-vfd \
             LDFLAGS="-L/home/runner/work/hdf5/hdf5/aocc-compiler-4.2.0/lib \
             -L/home/runner/work/hdf5/hdf5/openmpi-4.1.6-install/lib"
 
       - name: Autotools Build
         shell: bash
-        env:
-          NPROCS: 2
         run: |
           export PATH=/home/runner/work/hdf5/hdf5/openmpi-4.1.6-install/bin:/usr/local/bin:$PATH
           make -j3
         working-directory: ${{ runner.workspace }}/build
 
+      # ph5diff tests are in the tools/tests directory so they will get run
+      # here, so leave NPROCS set here as well
       - name: Autotools Run Tests
         env:
           NPROCS: 2
         run: |
           export PATH=/home/runner/work/hdf5/hdf5/openmpi-4.1.6-install/bin:/usr/local/bin:$PATH
-          make check -j
+          cd test && make check -j2 && cd ..
+          cd tools && make check -j2 && cd ..
+          cd hl && make check -j2 && cd ..
         working-directory: ${{ runner.workspace }}/build
 
-      - name: Autotools Install
+      - name: Autotools Run Parallel Tests
         env:
           NPROCS: 2
+        run: |
+          export PATH=/home/runner/work/hdf5/hdf5/openmpi-4.1.6-install/bin:/usr/local/bin:$PATH
+          cd testpar && make check && cd ..
+        working-directory: ${{ runner.workspace }}/build
+
+      - name: Autotools Install
         run: |
           export PATH=/home/runner/work/hdf5/hdf5/openmpi-4.1.6-install/bin:/usr/local/bin:$PATH
           make install

.github/workflows/aocc-cmake.yml

@@ -71,6 +71,7 @@ jobs:
           -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \
           -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF \
           -DHDF5_ENABLE_PARALLEL:BOOL=ON \
+          -DHDF5_ENABLE_SUBFILING_VFD:BOOL=ON \
           -DHDF5_BUILD_CPP_LIB:BOOL=OFF \
           -DLIBAEC_USE_LOCALCONTENT=OFF \
           -DZLIB_USE_LOCALCONTENT=OFF \
@@ -89,5 +90,11 @@ jobs:
       - name: CMake Run Tests
         shell: bash
         run: |
-          ctest . --parallel 2 -C ${{ inputs.build_mode }} -V
+          ctest . -E MPI_TEST --parallel 2 -C ${{ inputs.build_mode }} -V
+        working-directory: ${{ runner.workspace }}/build
+
+      - name: CMake Run Parallel Tests
+        shell: bash
+        run: |
+          ctest . -R MPI_TEST -C ${{ inputs.build_mode }} -V
         working-directory: ${{ runner.workspace }}/build

.github/workflows/autotools.yml

@@ -100,6 +100,12 @@ jobs:
         name: "Autotools TestExpress Workflows"
         uses: ./.github/workflows/testxpr-auto.yml
 
+    call-release-auto-julia:
+        name: "Autotools Julia Workflows"
+        uses: ./.github/workflows/julia-auto.yml
+        with:
+          build_mode: "production"
+
 #  workflow-msys2-autotools:
 #    name: "CMake msys2 Workflows"
 #    uses: ./.github/workflows/msys2-auto.yml

.github/workflows/clang-format-check.yml

@@ -1,17 +1,20 @@
 name: clang-format Check
 on:
   pull_request:
+
 permissions:
   contents: read
+
 jobs:
   formatting-check:
     name: Formatting Check
     runs-on: ubuntu-latest
     if: "!contains(github.event.head_commit.message, 'skip-ci')"
     steps:
     - uses: actions/[email protected]
+
     - name: Run clang-format style check for C and Java code
-      uses: DoozyX/clang-format-lint-action@v0.17
+      uses: DoozyX/clang-format-lint-action@v0.18.2
       with:
         source: '.'
         extensions: 'c,h,cpp,hpp,java'

.github/workflows/clang-format-fix.yml

@@ -11,8 +11,10 @@ name: clang-format Commit Changes
 on: 
   workflow_dispatch:
   push:
+
 permissions:
   contents: read
+
 jobs:
   formatting-check:
     name: Commit Format Changes
@@ -21,16 +23,18 @@ jobs:
     permissions:
         contents: write # In order to allow EndBug/add-and-commit to commit changes
     steps:
-    - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
+    - uses: actions/[email protected]
+
     - name: Fix C and Java formatting issues detected by clang-format
-      uses: DoozyX/clang-format-lint-action@d3c7f85989e3b6416265a0d12f8b4a8aa8b0c4ff # v0.13
+      uses: DoozyX/clang-format-lint-action@v0.18.2
       with:
         source: '.'
         extensions: 'c,h,cpp,hpp,java'
         clangFormatVersion: 13
         inplace: True
         style: file
         exclude: './config ./hl/src/H5LTanalyze.c ./hl/src/H5LTparse.c ./hl/src/H5LTparse.h ./src/H5Epubgen.h ./src/H5Einit.h ./src/H5Eterm.h ./src/H5Edefin.h ./src/H5version.h ./src/H5overflow.h'
+
     - uses: EndBug/add-and-commit@a94899bca583c204427a224a7af87c02f9b325d5 # v9.1.4
       with:
           author_name: github-actions

.github/workflows/cmake-bintest.yml

@@ -161,7 +161,7 @@ jobs:
       - name: Get published binary (MacOS_latest)
         uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4.1.8
         with:
-          name: tgz-osx-${{ inputs.build_mode }}-binary
+          name: tgz-macos14_clang-${{ inputs.build_mode }}-binary
           path: ${{ github.workspace }}
 
       - name: Uncompress hdf5 binary (MacOS_latest)
@@ -192,7 +192,7 @@ jobs:
         id: setup-fortran
         with:
           compiler: gcc
-          version: 12
+          version: 14
 
       - name: Run ctest (MacOS_latest)
         id: run-ctest
@@ -201,6 +201,6 @@ jobs:
           HDF5_PLUGIN_PATH: ${{ steps.set-hdf5lib-name.outputs.HDF5_PLUGIN_PATH }}
         run: |
           cd "${{ steps.set-hdf5lib-name.outputs.HDF5_ROOT }}/share/HDF5Examples"
-          cmake --workflow --preset=ci-StdShar-OSX-Clang --fresh
+          cmake --workflow --preset=ci-StdShar-MACOS-Clang --fresh
         shell: bash