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CMake link line needs to use new HDF5_ENABLE_THREADS #4685

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merged 1 commit into from
Aug 2, 2024

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byrnHDF
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@byrnHDF byrnHDF commented Aug 1, 2024

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@byrnHDF byrnHDF added Merge - To 1.14 This needs to be merged to HDF5 1.14 Priority - 0. Blocker ⛔ This MUST be merged for the release to happen Component - Testing Code in test or testpar directories, GitHub workflows Component - Build CMake, Autotools Type - Bug Please report security issues to [email protected] instead of creating an issue on GitHub labels Aug 1, 2024
@byrnHDF byrnHDF self-assigned this Aug 1, 2024
@lrknox
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lrknox commented Aug 1, 2024

Fixes link error, but ping pong test in test/ttsafe_semaphore.c sometimes passes, sometimes fails:

UNEXPECTED VALUE from ping pong should be 1000001, but is 1000000 at line 111 in /home/hdftest/snapshots-hdf5/current/test/ttsafe_semaphore.c

Also failed similarly with MPICH 3.3 on jelly and maybe some other machines before this PR, after yesterday's commit.

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lrknox commented Aug 1, 2024

@qkoziol, this PR eliminates link errors for thread functions when building with CMake on various systems today. We also see the ping pong error above, not related to the link error. It occurred for one of the github test configurations when this PR was created, but the configuration passed when it was re-run. Is the lightweight system semaphores (semaphore) subtest always expected to have value 1000001, or will it sometimes correctly return value 1000000?

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qkoziol commented Aug 2, 2024

Thank you for fixing this.

I'll check into the intermittent ping pong failures for the semaphores ASAP tomorrow. (It should always be 1000001)

@lrknox lrknox merged commit 0f620e9 into HDFGroup:develop Aug 2, 2024
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@byrnHDF byrnHDF deleted the develop-fix-threads branch August 5, 2024 15:34
lrknox pushed a commit to lrknox/hdf5 that referenced this pull request Aug 21, 2024
lrknox added a commit that referenced this pull request Aug 22, 2024
* Warning fix (#4682)

* warning fix

* warning fix

* CMake link line needs to use new HDF5_ENABLE_THREADS (#4685)

* Correct the properties for using THREADS library (#4690)

* Bump the github-actions group with 5 updates (#4688)

Bumps the github-actions group with 5 updates:

| Package | From | To |
| --- | --- | --- |
| [actions/download-artifact](https://github.com/actions/download-artifact) | `4.1.7` | `4.1.8` |
| [DoozyX/clang-format-lint-action](https://github.com/doozyx/clang-format-lint-action) | `0.13` | `0.17` |
| [softprops/action-gh-release](https://github.com/softprops/action-gh-release) | `2.0.6` | `2.0.8` |
| [ossf/scorecard-action](https://github.com/ossf/scorecard-action) | `2.3.3` | `2.4.0` |
| [github/codeql-action](https://github.com/github/codeql-action) | `3.25.11` | `3.25.15` |


Updates `actions/download-artifact` from 4.1.7 to 4.1.8
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@65a9edc...fa0a91b)

Updates `DoozyX/clang-format-lint-action` from 0.13 to 0.17
- [Release notes](https://github.com/doozyx/clang-format-lint-action/releases)
- [Commits](DoozyX/clang-format-lint-action@v0.13...v0.17)

Updates `softprops/action-gh-release` from 2.0.6 to 2.0.8
- [Release notes](https://github.com/softprops/action-gh-release/releases)
- [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md)
- [Commits](softprops/action-gh-release@a74c6b7...c062e08)

Updates `ossf/scorecard-action` from 2.3.3 to 2.4.0
- [Release notes](https://github.com/ossf/scorecard-action/releases)
- [Changelog](https://github.com/ossf/scorecard-action/blob/main/RELEASE.md)
- [Commits](ossf/scorecard-action@dc50aa9...62b2cac)

Updates `github/codeql-action` from 3.25.11 to 3.25.15
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@b611370...afb54ba)

---
updated-dependencies:
- dependency-name: actions/download-artifact
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: DoozyX/clang-format-lint-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: github-actions
- dependency-name: softprops/action-gh-release
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: ossf/scorecard-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: github-actions
- dependency-name: github/codeql-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
...

* Fix segfault when closing datatype during failure in H5Topen2 (#4683)

* Rework Dynamic Analysis and sanitize testing (#4681)

* Ignore predetermined failing test and check pointer before use

* Rework Analysis process

* Remove another H5E_BEGIN/END_TRY within the library (#4675)

* Update logic for (deprecated) H5Gget_objinfo() call to eliminate H5E_BEGIN_TRY

* Handle case for '.' at the end of a path

* Drop H5E_BEGIN/END_TRY and just check the error return from H5I_clear_types() (#4694)

Original case that the change in commit 2dc738a
no longer applies.

* Add check of returned value from API calls. (#4702)

These were found while investigating GH-4672, but they were not related
to GH-4672.

* Add mac dmg binary and remove old macos-13 workflows (#4699)

* Add Windows SHLWAPI lib to public interface (#4701)

* Use local variable in btree2 and print value (#4679)

* Correct logic

* Technically, level 1 Express could skip tests

* Add windows signing (#4703)

* Add tests for H5R get name APIs (#4657)

Added functionality tests for the following APIs:
H5Rget_file_name
H5Rget_obj_name
H5Rget_attr_name

Also removed "+1" when returning a name length in H5R__get_attr_name().
The exter "+1" gave an incorrect value for the length of the referenced
object's attribute name.

Fixed GH-4447

* Fix Fortran test

The C API H5Rget_attr_name incorrectly added 1 to the length of the
referenced object's attribute name, so the Fortran API h5rget_attr_name_f
removed 1 from the returned value to accommodate the incorrectness.
This PR fixes H5Rget_attr_name so this workaround in h5rget_attr_name_f
is no longer needed.

* Add test H5Aget_name against H5Rget_attr_name

* Replace Visual Studio ???? with 2022 in MSI README file (#4709)

* Change logic for checking secrets exists (#4711)

* Change osx refs to macos (#4707)

* Replace alias \Code with \TText (#4714)

Fixed GH-2151

* Correct signing names and variables (#4713)

* Add secrets to release workflow (#4719)

* Add missing blosc2 info (#4717)

* Fix error return types in H5Rdeprec.c (#4722)

Copy-pasted code from elsewhere used FAIL instead of H5G_UNKNOWN
and H5I_INVALID_HID.

* Fix the release reference name (#4721)

* Test creating unseekable file (#4720)

* Cleanup up tests (#4724)

* Add arch name to dmg file name (#4732)

The binaries in snapshot dmg file do not work on x86_64.

* Fix snapshot CI failure by adding arch name to dmg file (#4734)

See also #4732.

* Fix incorrect VOL vs. non-VOL calls partially (#4733)

* Fix incorrect VOL vs. non-VOL calls

H5Lget_info2() called H5I_object() instead of H5VL_vol_object() crashed
user application.
This is a wide-spread issue (GH-4730) but this PR only addresses GH-4705.

* Remove an incorrect change

* Fix segfault in ROS3 credential parsing (#4736)

* Fix segfault in s3 credential parsing

* Fix AWS cred parsing when >1 profile provided

* Revert gh-pages action hash to fix daily build (#4735)

* Revert gh-pages action hash to fix daily build

See also #4734

* Revert gh-pages action hash to fix daily build

* Eliminate another use of H5E_clear_stack() within the library (#4726)

* Remove call to H5E_clear_stack()

Also clean up a bunch of error macros and the return value from H5B_valid()
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Component - Build CMake, Autotools Component - Testing Code in test or testpar directories, GitHub workflows Merge - To 1.14 This needs to be merged to HDF5 1.14 Priority - 0. Blocker ⛔ This MUST be merged for the release to happen Type - Bug Please report security issues to [email protected] instead of creating an issue on GitHub
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