Merge branch 'dev' of https://github.com/e0404/matRad into dev_classGUI

for Merge experiment

.github/workflows/tests.yml

@@ -0,0 +1,40 @@
+# This is a basic workflow to help you get started with Actions
+name: Tests
+# Controls when the action will run. 
+on: [push, pull_request, workflow_dispatch]  
+jobs:
+  test-matlab: #Matlab test Job
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2 # Checks-out repository under $GITHUB_WORKSPACE
+      # Install MATLAB
+      - name: Install MATLAB
+        uses: matlab-actions/setup-matlab@v1        
+      # Runs test command
+      - name: Run Tests
+        uses: matlab-actions/run-command@v1
+        with:
+          command: cd unitTest; matRad_runTests
+  test-octave: #Octave test Job
+    runs-on: ubuntu-20.04 # We use Ubuntu-20.04 because it has Octave 5.2
+    steps:
+      - uses: actions/checkout@v2 # Checks-out repository under $GITHUB_WORKSPACE
+      - name: Install OCTAVE
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y gdb gfortran fonts-freefont-otf gnuplot-x11 libgdcm-dev octave liboctave-dev
+      - name: Prepare Test Environment
+        run: |
+          sudo chmod +x .travis/before_install_linux.sh
+          sudo .travis/before_install_linux.sh
+      - name: Run Tests
+        uses: GabrielBB/xvfb-action@v1 #For Headless tests
+        with:
+          run: .travis/runtests.sh octave-cli
+      - name: Upload Logs if failure
+        uses: actions/upload-artifact@v2
+        if: failure()
+        with:
+          name: Test Log
+          path: runtests.log
+

AUTHORS.txt

@@ -15,14 +15,19 @@ List of all matRad developers that contributed code (alphabetical)
 * Emily Heath
 * Cindy Hermann
 * Noa Homolka
+* Fabian Jäger
+* Navid Khaledi
 * Thomas Klinge
+* Jeremias Kunz
+* Paul Anton Meder
 * Henning Mescher
-* Lucas-Raphael M�ller
+* Lucas-Raphael Müller
 * Ahmad Neishabouri
 * Martina Palkowitsch
 * Giuseppe Pezzano
 * Daniel Ramirez
 * Carsten Scholz
+* Camilo Sevilla
 * Alexander Stadler
 * Niklas Wahl
 * Jona Welsch

CITATION.cff

@@ -0,0 +1,123 @@
+cff-version: 1.2.0
+message: "If you use matRad, consider citing it and the corresponding research paper"
+authors:
+- family-names: "Ackermann"
+  given-names: "Benjamin"
+- family-names: "Bangert"
+  given-names: "Mark"
+- family-names: "Bennan"
+  given-names: "Amit Ben Antony"
+- family-names: "Burigo"
+  given-names: "Lucas"
+- family-names: "Cabal"
+  given-names: "Gonzalo"
+- family-names: "Cisternas"
+  given-names: "Eduardo"
+- family-names: "Charton"
+  given-names: "Louis"
+- family-names: "Christiansen"
+  given-names: "Eric"
+- family-names: "Ecker"
+  given-names: "Swantje"
+- family-names: "Ellerbrock"
+  given-names: "Malte"
+- family-names: "Gabryś"
+  given-names: "Hubert"
+- family-names: "Handrack"
+  given-names: "Josefine"
+- family-names: "Heath"
+  given-names: "Emily"
+- family-names: "Hermann"
+  given-names: "Cindy"
+- family-names: "Homolka"
+  given-names: "Noa"
+- family-names: "Jäkel"
+  given-names: "Oliver"
+- family-names: "Klinge"
+  given-names: "Thomas"
+- family-names: "Mairani"
+  given-names: "Andrea"
+- family-names: "Mescher"
+  given-names: "Hennig"
+- family-names: "Müller"
+  given-names: "Lucas-Raphael"
+- family-names: "Neishabouri"
+  given-names: "Ahmad"
+- family-names: "Palkowitsch"
+  given-names: "Martina"
+- family-names: "Parodi"
+  given-names: "Katia"
+- family-names: "Pezzano"
+  given-names: "Giuseppe"
+- family-names: "Ramirez"
+  given-names: "Daniel"
+- family-names: "Stadler"
+  given-names: "Alexander"
+- family-names: "Ulrich"
+  given-names: "Silke"
+- family-names: "Wahl"
+  given-names: "Niklas"
+  orcid: "https://orcid.org/0000-0002-1451-223X"
+- family-names: "Welsch"
+  given-names: "Jona"
+- family-names: "Wieser"
+  given-names: "Hans-Peter"
+- family-names: "Winter"
+  given-names: "Johanna"
+- family-names: "Xu"
+  given-names: "Tong" 
+
+title: "matRad"
+version: 2.10.1
+doi: 10.5281/zenodo.3879616
+date-released: 2020-06-05
+url: "http://www.matRad.org"
+location: "Heidelberg"
+organization: "Deutsches Krebsforschungszentrum"
+preferred-citation:
+  type: article
+  authors:
+  - family-names: "Wieser"
+    given-names: "Hans-Peter"
+  - family-names: "Cisternas"
+    given-names: "Eduardo"
+  - family-names: "Wahl"
+    given-names: "Niklas"
+    orcid: "https://orcid.org/0000-0002-1451-223X"
+  - family-names: "Ulrich"
+    given-names: "Silke"
+  - family-names: "Stadler"
+    given-names: "Alexander"
+  - family-names: "Mescher"
+    given-names: "Hennig"
+  - family-names: "Müller"
+    given-names: "Lucas-Raphael"
+  - family-names: "Klinge"
+    given-names: "Thomas"
+  - family-names: "Gabryś"
+    given-names: "Hubert"
+  - family-names: "Burigo"
+    given-names: "Lucas"
+  - family-names: "Mairani"
+    given-names: "Andrea"
+  - family-names: "Ecker"
+    given-names: "Swantje"
+  - family-names: "Ackermann"
+    given-names: "Benjamin"
+  - family-names: "Ellerbrock"
+    given-names: "Malte"
+  - family-names: "Parodi"
+    given-names: "Katia"
+  - family-names: "Jäkel"
+    given-names: "Oliver"
+  - family-names: "Bangert"
+    given-names: "Mark"
+
+  doi: 10.1002/mp.12251
+  journal: "Medical Physics"
+  start: 2556 
+  end: 2568
+  title: "Development of the open-source dose calculation and optimization toolkit matRad"
+  issue: 6
+  volume: 46
+  year: 2017

ChangeLog.txt

@@ -1,3 +1,7 @@
+Development Changes
+	- Bugfixes:
+		- Fix SFUD wrapper for new pln & cst format
+
 Version 2.10.1 - Patch release for "Blaise" 
 	Release with small updates, clean-ups and bugfixes    
     - Bugfix in 3D view due to inconsistent angles in pln & stf