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Releases: Hydro3639/NanoPhase

NanoPhase v0.2.3

03 Jan 19:30
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a. Add SemiBin as a new binner (improved genome reconstruction performance a lot: ~30% based on wastewater data evaluation)
b. Update medaka from 1.6.0 to 1.7.2, allowing to use the models for new sequencing chemistries

NanoPhase v0.2.2

14 Sep 04:52
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  1. Add nanophase plasmid as a new test module
    a. fast plasmid annotation
    b. default database: PLSDB
    c. support customized database
    d. you may add VFDB or others for trial use
  2. nanophase meta/isolate: support output coverage info
  3. nanophase args: speed optimization and support customized database

NanoPhase v0.2.1

01 Sep 13:51
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Add three main modules
A: nanophase meta for metagenomics datasets (long-read-only + hybrid strategy)
B: nanophase isolate for bacterial/archaeal isolates datasets (long-read-only + hybrid strategy)
C: nanophase args for Antibiotic Resistance Genes annotation based on the SARG database

NanoPhase v0.1.0

03 May 07:52
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The initial release of NanoPhase: support genome reconstruction using only nanopore long reads or hybrid strategy (--hybrid)