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merge develop to master for 5.12 #9023

Merged
merged 970 commits into from
Oct 4, 2022
Merged

merge develop to master for 5.12 #9023

merged 970 commits into from
Oct 4, 2022
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Aug 9, 2022

  1. remove space

    qqmyers committed Aug 9, 2022
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  10. Apply suggestions from code review

    Co-authored-by: Philip Durbin <[email protected]>
    qqmyers and pdurbin authored Aug 9, 2022
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  11. improve wording

    qqmyers committed Aug 9, 2022
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  15. Merge pull request #8902 from GlobalDataverseCommunityConsortium/remo…

    …ve_editVersion_calls
    
    Remove editVersion calls, standardize restricted file render logic
    kcondon authored Aug 9, 2022
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  17. Merge remote-tracking branch 'IQSS/develop' into GDCC/8449-use_origin…

    …al_files_in_archival_bag
    qqmyers committed Aug 9, 2022
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  18. single quotes in curl

    qqmyers committed Aug 9, 2022
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  19. single quotes in curl

    qqmyers committed Aug 9, 2022
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Commits on Aug 10, 2022

  1. Merge pull request #8751 from GlobalDataverseCommunityConsortium/GDCC…

    …/8749-S3Archiver
    
    GDCC/8749 S3 Archiver
    kcondon authored Aug 10, 2022
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  5. Merge remote-tracking branch 'IQSS/develop' into GDCC/8449-use_origin…

    …al_files_in_archival_bag
    qqmyers committed Aug 10, 2022
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  7. add BagIT to API test suite #8449

    Also allow strings as setting keys because
    :BagItLocalPath isn't in the usual enum.
    pdurbin committed Aug 10, 2022
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  8. remove cruft from tests #7324

    pdurbin committed Aug 10, 2022
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Commits on Aug 11, 2022

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Commits on Aug 12, 2022

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  3. fix npes on template page

    qqmyers committed Aug 12, 2022
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  4. add == true for clarity

    qqmyers committed Aug 12, 2022
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  5. get blocks from metadataroot

    qqmyers committed Aug 12, 2022
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  6. Merge pull request #8917 from GlobalDataverseCommunityConsortium/GDCC…

    …/8916-fix_template_npe
    
    fix npes on template page
    kcondon authored Aug 12, 2022
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  12. Merge pull request #8775 from GlobalDataverseCommunityConsortium/GDCC…

    …/DC-3B
    
    GDCC/HDC 3B-Bi-directional LDN messaging, Template Instructions
    kcondon authored Aug 12, 2022
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  13. globus guide docs

    qqmyers committed Aug 12, 2022
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  16. Merge remote-tracking branch 'IQSS/develop' into GDCC/8449-use_origin…

    …al_files_in_archival_bag
    qqmyers committed Aug 12, 2022
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Commits on Aug 14, 2022

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Commits on Aug 15, 2022

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  2. Merge pull request #8752 from GlobalDataverseCommunityConsortium/GDCC…

    …/8750-DRS_Archiver
    
    GDCC/8750 DRS archiver
    kcondon authored Aug 15, 2022
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Commits on Aug 16, 2022

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  2. use single file API call /add

    qqmyers committed Aug 16, 2022
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  4. add missing label

    qqmyers committed Aug 16, 2022
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Commits on Aug 17, 2022

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  2. add remote store in direct access to support sending file delete call

    and avoid failure warning in log.
    qqmyers committed Aug 17, 2022
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  4. typo

    qqmyers committed Aug 17, 2022
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  5. typo

    qqmyers committed Aug 17, 2022
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  6. fix for delete

    qqmyers committed Aug 17, 2022
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  7. update to docs per QA

    qqmyers committed Aug 17, 2022
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  9. add direct link to s3 call

    qqmyers committed Aug 17, 2022
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Commits on Aug 18, 2022

  1. merge develop

    ErykKul committed Aug 18, 2022
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  2. Add test for bad remote URLs

    qqmyers committed Aug 18, 2022
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  3. note re 404 URLs

    qqmyers committed Aug 18, 2022
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  4. Add test for bad remote URLs

    qqmyers committed Aug 18, 2022
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  5. note re 404 URLs

    qqmyers committed Aug 18, 2022
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  6. Merge pull request #7325 from GlobalDataverseCommunityConsortium/IQSS…

    …/7324_TRSA-HTTP-store
    
    Simple support for remote web stores
    kcondon authored Aug 18, 2022
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  9. checks on storageidentifiers

    qqmyers committed Aug 18, 2022
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  11. Merge pull request #8920 from pkiraly/8919-removing-an-extra-space

    #8919: removing an extra space from an API message
    kcondon authored Aug 18, 2022
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  12. Merge pull request #8793 from adaybujeda/8535-new-static-facet-show-m…

    …etadata-blocks
    
    Added new static facet to show metadata blocks with values
    kcondon authored Aug 18, 2022
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  15. Merge remote-tracking branch 'IQSS/develop' into GDCC/8449-use_origin…

    …al_files_in_archival_bag
    qqmyers committed Aug 18, 2022
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  17. strip any html from archival status

    which gets displayed
    qqmyers committed Aug 18, 2022
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  18. typo

    qqmyers committed Aug 18, 2022
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Commits on Aug 19, 2022

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Commits on Aug 22, 2022

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  3. add flyway for new constraint

    qqmyers committed Aug 22, 2022
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  4. add newline

    qqmyers committed Aug 22, 2022
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Commits on Aug 24, 2022

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  2. Merge pull request #8901 from GlobalDataverseCommunityConsortium/GDCC…

    …/8449-use_original_files_in_archival_bag
    
    GDCC/8449 use original files in archival bag
    landreev authored Aug 24, 2022
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Commits on Aug 25, 2022

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Commits on Aug 26, 2022

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  3. Merge pull request #8939 from IQSS/8937-harvest-test-failure

    Quick fix for a failing harvesting test  #8937
    pdurbin authored Aug 26, 2022
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Commits on Aug 27, 2022

  1. Merge pull request #8927 from IQSS/8868-fix-json-import

    8868 fix json import
    landreev authored Aug 27, 2022
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Commits on Aug 29, 2022

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Commits on Aug 30, 2022

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  2. handle null mimetype

    qqmyers committed Aug 30, 2022
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Commits on Aug 31, 2022

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  2. rev various software libraries in pom.xml files

    Patrick Carlson committed Aug 31, 2022
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  3. rev Solr dependency for solr-solrj to 8.11.2

    Patrick Carlson committed Aug 31, 2022
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Commits on Sep 1, 2022

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Commits on Sep 2, 2022

  1. return 400 for bad JSON

    qqmyers committed Sep 2, 2022
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Commits on Sep 6, 2022

  1. Merge pull request #8925 from GlobalDataverseCommunityConsortium/GDCC…

    …/8605-add-archival-status
    
    GDCC/8924 - Check archival status
    sekmiller authored Sep 6, 2022
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  4. tweak docs and release note #7000

    Emphasize that the change is for devs for now. The idea is to migrate
    settings to the new framework over time.
    pdurbin committed Sep 6, 2022
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Commits on Sep 7, 2022

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  2. Change setting name

    qqmyers committed Sep 7, 2022
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  5. typos (test Jenkins) #8859

    pdurbin committed Sep 7, 2022
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  6. Merge pull request #8961 from GlobalDataverseCommunityConsortium/IQSS…

    …/8960-change_DRS_setting_name
    
    Change setting name
    pdurbin authored Sep 7, 2022
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Commits on Sep 8, 2022

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  2. Merge pull request #44 from pdurbin/8882-shib-affiliation

    add test cases for shib affiliation #8882
    Louis-wr authored Sep 8, 2022
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  3. Update doc/release-notes/7000-mpconfig-support.md

    Co-authored-by: Oliver Bertuch <[email protected]>
    pdurbin and poikilotherm authored Sep 8, 2022
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  4. Update prep.rst

    Added LIP's repo with resources for an advanced installation as proposed by Philip Durbin.
    zbenta authored Sep 8, 2022
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  5. Merge pull request #8965 from zbenta/patch-1

    add lip-computing/dataverse to prep.rst
    pdurbin authored Sep 8, 2022
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  11. Update making-releases.rst

    tiny cosmetic change to the version number in the example
    landreev authored Sep 8, 2022
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  13. Merge branch 'develop' into 8720-allow-metadata-reExport-in-smaller-b…

    …atches #8720
    
    Conflicts:
    src/main/java/edu/harvard/iq/dataverse/DatasetServiceBean.java
    
    It looks like @landreev removed the updateLastExportTimeStamp method
    in 8135490 as part of PR #8782 so I made sure it's still gone.
    pdurbin committed Sep 8, 2022
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  14. Merge pull request #8743 from lubitchv/8715-importddi-termofuse

    8715 importddi termofuse
    landreev authored Sep 8, 2022
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Commits on Sep 9, 2022

  1. Merge pull request #3 from pdurbin/8722-custom-js

    8722 custom js docs
    ErykKul authored Sep 9, 2022
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  3. Apply suggestions from code review

    Documentation textual improvements
    
    Co-authored-by: Philip Durbin <[email protected]>
    PaulBoon and pdurbin authored Sep 9, 2022
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  4. Merge pull request #4 from pdurbin/8720-merge-conflicts

    8720 merge conflicts
    PaulBoon authored Sep 9, 2022
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  8. cross link related APIs #8720

    pdurbin committed Sep 9, 2022
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  9. Merge pull request #8880 from DataverseNO/dvno-Affiliation

    optionally split Shibboleth affiliation and return first or last value
    pdurbin authored Sep 9, 2022
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Commits on Sep 12, 2022

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  2. Merge pull request #5 from pdurbin/8720-reexport

    8720 reexport
    PaulBoon authored Sep 12, 2022
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Commits on Sep 13, 2022

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Commits on Sep 14, 2022

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  2. #8859 add test framework

    sekmiller committed Sep 14, 2022
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  6. alter download info

    qqmyers committed Sep 14, 2022
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  8. Apply suggestions from code review

    Co-authored-by: Philip Durbin <[email protected]>
    qqmyers and pdurbin authored Sep 14, 2022
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  10. Merge pull request #8923 from GlobalDataverseCommunityConsortium/GDCC…

    …/add-checks
    
    GDCC/Update storageIO processing to match RemoteOverlay
    landreev authored Sep 14, 2022
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  12. Merge pull request #8823 from poikilotherm/7000-mpconfig-infra

    7000 mpconfig basic infra
    pdurbin authored Sep 14, 2022
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  13. Merge branch 'develop' into GDCC/DC-1 #8891

    Conflicts (keep isValidIdentifier):
    src/main/java/edu/harvard/iq/dataverse/dataaccess/S3AccessIO.java
    pdurbin committed Sep 14, 2022
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  14. refactor per qa

    qqmyers committed Sep 14, 2022
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  17. message/email tweaks

    qqmyers committed Sep 14, 2022
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Commits on Sep 15, 2022

  1. back out changes to Solr as they're not security related

    Patrick Carlson committed Sep 15, 2022
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  2. cut/paste error

    qqmyers committed Sep 15, 2022
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  3. fix Boolean conversion

    qqmyers committed Sep 15, 2022
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Commits on Sep 16, 2022

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  2. simplify messages

    qqmyers committed Sep 16, 2022
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  4. fix bullets #8891

    pdurbin committed Sep 16, 2022
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  5. doc suggestions #8891

    pdurbin committed Sep 16, 2022
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  6. Merge pull request #29 from pdurbin/8891-doc-suggestions

    doc suggestions #8891
    qqmyers authored Sep 16, 2022
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Commits on Sep 19, 2022

  1. Merge pull request #8835 from GlobalDataverseCommunityConsortium/GDCC…

    …/7527-fix-redetect
    
    GDCC/7527-fix-redetect
    sekmiller authored Sep 19, 2022
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  7. Merge pull request #8891 from GlobalDataverseCommunityConsortium/GDCC…

    …/DC-1
    
    GDCC/Globus and Big Data Support
    pdurbin authored Sep 19, 2022
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  9. Update release notes

    qqmyers committed Sep 19, 2022
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  12. Merge pull request #8894 from GlobalDataverseCommunityConsortium/GDCC…

    …/8611-HDC_and_related_release_notes
    
    Release Notes related to HDC 1 and 3A/3B
    pdurbin authored Sep 19, 2022
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  13. #8859 resolve conflict

    sekmiller committed Sep 19, 2022
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Commits on Sep 20, 2022

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  3. docs(deps): add step in rel. notes for Payara update #8947

    As documented by @qqmyers in #8230 one needs to remove the
    `lib/databases` folder from the domain dir on update to
    a Payara version beyond 5.2021.8.
    poikilotherm committed Sep 20, 2022
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  4. fix,docs(deps): delete lib/databases folder in scripts #8947

    With the update to a Payara version past 5.2021.8, the `lib/databases`
    folder needs to be removed by scripts etc (as with osgi-cache and
    generated folders) during rebuild/upgrade of a domain to avoid
    incompatibilities.
    
    See also: #8230
    poikilotherm committed Sep 20, 2022
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Commits on Sep 21, 2022

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  2. Merge pull request #8723 from ErykKul/8722_custom_javascript

    custom JavaScript setting for metadata editing
    landreev authored Sep 21, 2022
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  3. Merge pull request #8906 from IQSS/8859-update-api-error-msg

    8859 update api error msg
    pdurbin authored Sep 21, 2022
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  5. Merge pull request #8949 from poikilotherm/8947-payara-5-2022-3

    8947 Update to Payara 5.2022.3
    pdurbin authored Sep 21, 2022
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Commits on Sep 22, 2022

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Commits on Sep 23, 2022

  1. document Dataverse.jl

    gaelforget committed Sep 23, 2022
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  2. fix link

    pdurbin authored Sep 23, 2022
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  3. Bump jsoup from 1.14.2 to 1.15.3

    Bumps [jsoup](https://github.com/jhy/jsoup) from 1.14.2 to 1.15.3.
    - [Release notes](https://github.com/jhy/jsoup/releases)
    - [Changelog](https://github.com/jhy/jsoup/blob/master/CHANGES)
    - [Commits](jhy/jsoup@jsoup-1.14.2...jsoup-1.15.3)
    
    ---
    updated-dependencies:
    - dependency-name: org.jsoup:jsoup
      dependency-type: direct:production
    ...
    
    Signed-off-by: dependabot[bot] <[email protected]>
    dependabot[bot] authored and pdurbin committed Sep 23, 2022
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  4. Merge pull request #8991 from gaelforget/dataverse_dot_jl

    document Dataverse.jl
    pdurbin authored Sep 23, 2022
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  5. Bump gson from 2.2.4 to 2.8.9

    Bumps [gson](https://github.com/google/gson) from 2.2.4 to 2.8.9.
    - [Release notes](https://github.com/google/gson/releases)
    - [Changelog](https://github.com/google/gson/blob/master/CHANGELOG.md)
    - [Commits](google/gson@gson-2.2.4...gson-parent-2.8.9)
    
    ---
    updated-dependencies:
    - dependency-name: com.google.code.gson:gson
      dependency-type: direct:production
    ...
    
    Signed-off-by: dependabot[bot] <[email protected]>
    dependabot[bot] authored and pdurbin committed Sep 23, 2022
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  10. Merge pull request #8993 from IQSS/8992-edit-ddi-npe

    switch to our regular createDataverseRequest pattern #8992
    pdurbin authored Sep 23, 2022
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  12. Update pom.xml

    Co-authored-by: Oliver Bertuch <[email protected]>
    pdurbin and poikilotherm authored Sep 23, 2022
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Commits on Sep 26, 2022

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  2. Merge pull request #8953 from carlsonp/security-fixes-pomxml

    Address security issues by package version updates in pom.xml files
    pdurbin authored Sep 26, 2022
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  4. Merge pull request #8877 from IQSS/8795-making-releases

    update Making Releases in dev guide (hotfixes too) #8795
    pdurbin authored Sep 26, 2022
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Commits on Sep 27, 2022

  1. Merge pull request #6 from pdurbin/8720-support-ids-too

    support database IDs too (as well as PIDs) #8720
    PaulBoon authored Sep 27, 2022
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  2. Merge branch 'develop' of github.com:IQSS/dataverse into 8720-allow-m…

    …etadata-reExport-in-smaller-batches
    PaulBoon committed Sep 27, 2022
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  3. Merge pull request #8721 from PaulBoon/8720-allow-metadata-reExport-i…

    …n-smaller-batches
    
    8720 allow metadata re export in smaller batches
    pdurbin authored Sep 27, 2022
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  4. #8979 addl Data Commons notes

    sekmiller committed Sep 27, 2022
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  6. #8979 fix typo

    sekmiller committed Sep 27, 2022
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  7. #8979 add experimental note

    sekmiller committed Sep 27, 2022
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Commits on Sep 28, 2022

  1. #8979 formatting, etc.

    sekmiller committed Sep 28, 2022
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  2. Update 5.12-release-notes.md

    adding the 5.12 version to the tsv download url
    landreev authored Sep 28, 2022
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  4. Update 5.12-release-notes.md

    Small change to the metadata reexport instructions at the end of the release note.
    landreev authored Sep 28, 2022
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Commits on Sep 29, 2022

  1. various fixes and changes #8979

    - highlight Globus and other big features at top
    - added missing snippet: New Computational Workflow Metadata Block
    - fix typos, etc.
    pdurbin committed Sep 29, 2022
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  2. Merge pull request #8996 from IQSS/8979-5-12-release-notes

    8979 5 12 release notes
    pdurbin authored Sep 29, 2022
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  3. bump version to 5.12

    pdurbin committed Sep 29, 2022
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Commits on Oct 4, 2022

  1. Merge pull request #9004 from IQSS/8980-5.12-version-bump

    bump version to 5.12
    landreev authored Oct 4, 2022
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