forked from hblasins/fiToolbox
-
Notifications
You must be signed in to change notification settings - Fork 1
ISET/isetfluorescence
Folders and files
Name | Name | Last commit message | Last commit date | |
---|---|---|---|---|
Repository files navigation
Image Systems Engineering Toolbox for Fluorescence (ISETfluorescence) The ISETfluorescence toolbox provides a set of functions to simulate scenes with fluorescent components. Here, we extend the open-source and freely available tools in Image Systems Engineering Toolbox for cameras (ISETCam). The toolbox also implements several reflectance and fluorescence separation and estimation algorithms. If you use this code in your work, please cite Henryk Blasinski, Joyce Farrell and Brian Wandell - "Simultaneous reflectance and fluorescence spectra estimation" 2016 (https://arxiv.org/abs/1605.04243) 0. License ---------- The code is provided as is. You are free to use and modify the code in non-commercial and research applications. If you are interested in commercial applications, please contact us as the method and apparatus is a subject of a US Patent 20,160,116,410. 1. Dependencies (required) -------------------------- a. Image Systems Engineering Toolbox (ISETCam) (https://github.com/ISET/ISETCam). b. cvx Convex Optimization toolbox for Matlab (www.cvxr.com). 2. Dependencies (optional) -------------------------- The following code is used by some data plotting scripts and are not required to simulate or analyze reflectance and fluorescence. a. Barwitherr function from Matlab File exchange. (http://www.mathworks.com/matlabcentral/fileexchange/30639-barwitherr-errors-varargin). b. Code accompanying the Computational Colour Science using Matlab from Matlab File exchange. (http://www.mathworks.com/matlabcentral/fileexchange/40640-computational-colour-science-using-matlab-2e) 3. Sample data -------------- The sample inputs to our algorithms as well as the results of the analyses can be downloaded from Stanford's Digital Repository: http://purl.stanford.edu/xc528jd5098 The zip file downloaded from the above side contains two directories: 'data' with raw input data from real captures and simulations and 'results' storing algorithm outputs. Please place these two folders directly in the fiToolbox root folder.
About
Fluorescence Imaging Toolbox for ISET
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published
Languages
- MATLAB 100.0%