Skip to content

Commit

Permalink
GITBOOK-310: change request with no subject merged in GitBook
Browse files Browse the repository at this point in the history
  • Loading branch information
fedorov authored and gitbook-bot committed Sep 27, 2023
1 parent 1d9c173 commit e3e74bb
Show file tree
Hide file tree
Showing 9 changed files with 207 additions and 107 deletions.
Binary file added .gitbook/assets/image (1) (1).png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified .gitbook/assets/image (1).png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added .gitbook/assets/image (2) (2).png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified .gitbook/assets/image (2).png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified .gitbook/assets/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added .gitbook/assets/see_the_view.gif
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
10 changes: 4 additions & 6 deletions data/organization-of-data/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,14 +2,12 @@

This section describes the current organization of IDC data. The organization of data was static from IDC Version 2 through IDC Version 13 except that [clinical data](organization-of-data-v2-through-v13-deprecated/clinical.md) was added in Version 11. Development of the clinical data resource is an ongoing project. From IDC v14, our data [became available](https://registry.opendata.aws/nci-imaging-data-commons/) from the Amazon AWS Open Data Registry, and the files in storage buckets were organized into series-level folders.

We maintain three representations of the data (namely, as files in GCS and AWS Storage buckets, metadata tables in Google BigQuery tables, and DICOM instances within a Google Cloud Healthcare DICOM store). These different representations are fully synchronized and correspond to the same content, but are intended to serve different use cases.
### [Files and metadata](files-and-metadata.md)

## [Files and metadata](files-and-metadata.md)
### [GA4GH DRS objects](organization-of-data-v2-through-v13-deprecated/guids-and-uuids.md)

## [GA4GH DRS objects](organization-of-data-v2-through-v13-deprecated/guids-and-uuids.md)

## [Clinical Data](organization-of-data-v2-through-v13-deprecated/clinical.md)
### [Clinical Data](organization-of-data-v2-through-v13-deprecated/clinical.md)

### [Organization of data, v1 through V13 (deprecated)](./#organization-of-data-v1-through-v13-deprecated)

## [Organization of data in v1 (deprecated)](organization-of-data-v1.md)
### [Organization of data in v1 (deprecated)](organization-of-data-v1.md)
300 changes: 201 additions & 99 deletions data/organization-of-data/files-and-metadata.md

Large diffs are not rendered by default.

4 changes: 2 additions & 2 deletions dicom/derived-objects/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -8,11 +8,11 @@ In this section we discuss derived DICOM objects, including annotations, that ar

As an example, the [Breast-Cancer-Screening-DBT](https://portal.imaging.datacommons.cancer.gov/explore/filters/?collection\_id=Community\&collection\_id=breast\_cancer\_screening\_dbt) collection is available in IDC. If you mouse over the name of that collection in the IDC Portal, the tooltip will provide the overview of the collection and the link to the source.

![](<../../.gitbook/assets/image (2).png>)
![](<../../.gitbook/assets/image (2) (2).png>)

You will also find the link to the source in the [list of collections available in IDC](https://portal.imaging.datacommons.cancer.gov/collections/).

![](../../.gitbook/assets/image.png)
![](<../../.gitbook/assets/image (2).png>)

Finally, if you select data using SQL, you can use the `source_DOI` and/or the source\_URL column to identify the source of each file in the subset you selected (learn more about `source_DOI`, licenses and attribution in the part 3 of our [Getting started tutorial](https://github.com/ImagingDataCommons/IDC-Tutorials/tree/master/notebooks/getting\_started)).

Expand Down

0 comments on commit e3e74bb

Please sign in to comment.