fix: fixes devcontainer.json and docker compose for local dev [skip ci]

.devcontainer/blazegraph/RWStore.properties

@@ -0,0 +1,50 @@
+#
+# Note: These options are applied when the journal and the triple store are
+# first created.
+
+##
+## Journal options.
+##
+
+# The backing file. This contains all your data.  You want to put this someplace
+# safe.  The default locator will wind up in the directory from which you start
+# your servlet container.
+com.bigdata.journal.AbstractJournal.file=bigdata.jnl
+
+# The persistence engine.  Use 'Disk' for the WORM or 'DiskRW' for the RWStore.
+com.bigdata.journal.AbstractJournal.bufferMode=DiskRW
+
+# Setup for the RWStore recycler rather than session protection.
+com.bigdata.service.AbstractTransactionService.minReleaseAge=1
+
+# Enable group commit. See http://wiki.blazegraph.com/wiki/index.php/GroupCommit
+# Note: Group commit is a beta feature in BlazeGraph release 1.5.1.
+#com.bigdata.journal.Journal.groupCommit=true
+
+com.bigdata.btree.writeRetentionQueue.capacity=4000
+com.bigdata.btree.BTree.branchingFactor=128
+
+# 200M initial extent.
+com.bigdata.journal.AbstractJournal.initialExtent=209715200
+com.bigdata.journal.AbstractJournal.maximumExtent=209715200
+
+##
+## Setup for QUADS mode without the full text index.
+##
+com.bigdata.rdf.sail.truthMaintenance=false
+com.bigdata.rdf.store.AbstractTripleStore.quads=true
+com.bigdata.rdf.store.AbstractTripleStore.statementIdentifiers=false
+com.bigdata.rdf.store.AbstractTripleStore.textIndex=true
+com.bigdata.rdf.store.AbstractTripleStore.axiomsClass=com.bigdata.rdf.axioms.NoAxioms
+
+# Bump up the branching factor for the lexicon indices on the default kb.
+com.bigdata.namespace.kb.lex.com.bigdata.btree.BTree.branchingFactor=400
+
+# Bump up the branching factor for the statement indices on the default kb.
+com.bigdata.namespace.kb.spo.com.bigdata.btree.BTree.branchingFactor=1024
+
+# Uncomment to enable collection of OS level performance counters.  When
+# collected they will be self-reported through the /counters servlet and
+# the workbench "Performance" tab.
+#
+# com.bigdata.journal.Journal.collectPlatformStatistics=true

.devcontainer/devcontainer.json

@@ -30,9 +30,8 @@
 	//Use 'forwardPorts' to make a list of ports inside the container available locally.
 	"forwardPorts": [
 		8000,
-		8080,
-		9999
+		8080
 	]
 	// Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
 	// "remoteUser": "root"
-}
+}

.devcontainer/docker-compose-standalone.yml

@@ -0,0 +1,52 @@
+version: '3'
+
+services:
+  intavia_backend_app:
+    build:
+      context: ..
+      dockerfile: Dockerfile
+      args:
+        # [Choice] Python version: 3, 3.8, 3.7, 3.6
+        VARIANT: "3.10"
+        # [Choice] Install Node.js
+        # On Linux, you may need to update USER_UID and USER_GID below if not your local UID is not 1000.
+        INSTALL_DEV: "true"
+        USER_UID: 1000
+        USER_GID: 1000
+
+      #- /home/sennierer/.ssh:/home/vscode/.ssh:cached
+
+      # Overrides default command so things don't shut down after the process ends.
+    # command: sleep infinity
+
+    # Runs app on the same network as the database container, allows "forwardPorts" in devcontainer.json function.
+    # network_mode: service:db
+    env_file:
+      - development-standalone.env
+
+    ports:
+      - "5000:5000"
+
+    # Uncomment the next line to use a non-root user for all processes.
+    # user: vscode
+
+    # Use "forwardPorts" in **devcontainer.json** to forward an app port locally.
+    # (Adding the "ports" property to this file will not forward from a Codespace.)
+  db:
+    image: lyrasis/blazegraph:2.1.5
+    environment:
+      JAVA_XMS: 512m
+      JAVA_XMX: 1g
+    volumes:
+      - ./blazegraph/data:/data
+      - ./blazegraph/RWStore.properties:/RWStore.properties
+    ports:
+      - "8889:8889"
+
+  redis:
+    image: bitnami/redis:latest
+    environment:
+      - ALLOW_EMPTY_PASSWORD=yes
+    # network_mode: service:db
+    # Add "forwardPorts": ["5432"] to **devcontainer.json** to forward PostgreSQL locally.
+    # (Adding the "ports" property to this file will not forward from a Codespace.)

.devcontainer/docker-compose.yml

@@ -25,21 +25,20 @@ services:
     network_mode: service:db
     env_file:
       - development.env
+
     # Uncomment the next line to use a non-root user for all processes.
     # user: vscode
 
     # Use "forwardPorts" in **devcontainer.json** to forward an app port locally.
     # (Adding the "ports" property to this file will not forward from a Codespace.)
   db:
-    image: nawer/blazegraph
+    image: lyrasis/blazegraph:2.1.5
     environment:
       JAVA_XMS: 512m
       JAVA_XMX: 1g
     volumes:
-      - ./var/blazegraph:/var/lib/blazegraph
-      - ./docker-entrypoint-initdb.d:/docker-entrypoint-initdb.d
-    ports:
-      - "9999:9999"
+      - ./blazegraph/data:/data
+      - ./blazegraph/RWStore.properties:/RWStore.properties
 
   redis:
     image: bitnami/redis:latest

.vscode/launch.json

@@ -5,15 +5,28 @@
     "version": "0.2.0",
     "configurations": [
         {
-            "name": "Python: FastAPI",
+            "name": "local blazegraph",
             "type": "python",
             "request": "launch",
             "module": "uvicorn",
             "args": [
                 "intavia_backend.main:app"
             ],
             "jinja": true,
-            "justMyCode": true
+            "justMyCode": true,
+            "env": {"SPARQL_ENDPOINT": "http://db:8080/bigdata/sparql"},
+        },
+        {
+            "name": "InTaVia production blazegraph",
+            "type": "python",
+            "request": "launch",
+            "module": "uvicorn",
+            "args": [
+                "intavia_backend.main:app"
+            ],
+            "jinja": true,
+            "justMyCode": true,
+            "env": {"SPARQL_ENDPOINT": "https://intavia-ts.acdh-dev.oeaw.ac.at/sparql"},
         }
     ]
 }