Continuous Integration #206
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| name: Continuous Integration | |
| on: | |
| schedule: | |
| - cron: "0 8 * * 1-5" | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| workflow_dispatch: | |
| concurrency: | |
| group: actions-id-${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| check-formatting: | |
| name: Check Build and Formatting Errors | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install pycodestyle isort | |
| - name: Check Build | |
| run: | | |
| python -m pip install . | |
| - name: Run pycodestyle | |
| run: | | |
| pycodestyle --statistics --count --max-line-length=150 --show-source --ignore=E203 . | |
| - name: Check Import Ordering Errors | |
| run: | | |
| isort --check-only --verbose . | |
| build-and-test: | |
| needs: check-formatting | |
| continue-on-error: true | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| name: ${{ matrix.os }} Python ${{ matrix.python-version }} Subtest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-name: temp | |
| condarc: | | |
| channels: | |
| - defaults | |
| - conda-forge | |
| channel_priority: flexible | |
| create-args: | | |
| python=${{ matrix.python-version }} | |
| - name: Install Minimal Dependencies | |
| run: | | |
| python -m pip install -e . | |
| python -m pip install coverage pytest | |
| - name: Run Minimal Tests | |
| run: | | |
| coverage run --source=. --omit=astartes/__init__.py,setup.py,test/* -m pytest -v | |
| - name: Install Molecules Dependencies | |
| run: | | |
| python -m pip install -e .[molecules] | |
| - name: Run All Tests | |
| run: | | |
| coverage run --source=. --omit=astartes/__init__.py,setup.py,test/* -m pytest -v | |
| - name: Show Coverage | |
| run: | | |
| coverage report -m | |
| ipynb-ci: | |
| needs: check-formatting | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| nb-file: | |
| ["barrier_prediction_with_RDB7/RDB7_barrier_prediction_example", "train_val_test_split_sklearn_example/train_val_test_split_example", "split_comparisons/split_comparisons", "mlpds_2023_astartes_demonstration/mlpds_2023_demo"] | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| name: Check ${{ matrix.nb-file }} Notebook Execution | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-name: temp | |
| condarc: | | |
| channels: | |
| - defaults | |
| - conda-forge | |
| channel_priority: flexible | |
| create-args: | | |
| python=3.11 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -e .[molecules,demos] | |
| python -m pip install notebook | |
| - name: Test Execution | |
| run: | | |
| cd examples/$(dirname ${{ matrix.nb-file }}) | |
| jupyter nbconvert --to script $(basename ${{ matrix.nb-file }}).ipynb | |
| ipython $(basename ${{ matrix.nb-file }}).py | |
| coverage-check: | |
| if: contains(github.event.pull_request.labels.*.name, 'PR Ready for Review') | |
| needs: [build-and-test, ipynb-ci] | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: "3.10" | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install -e .[molecules] | |
| python -m pip install coverage | |
| - name: Run Tests | |
| run: | | |
| coverage run --source=. --omit=astartes/__init__.py,setup.py,test/*,astartes/samplers/sampler.py -m unittest discover -v | |
| - name: Show Coverage | |
| run: | | |
| coverage report -m > temp.txt | |
| cat temp.txt | |
| python .github/workflows/coverage_helper.py | |
| echo "COVERAGE_PERCENT=$(cat temp2.txt)" >> $GITHUB_ENV | |
| - name: Request Changes via Review | |
| if: ${{ env.COVERAGE_PERCENT < 90 }} | |
| uses: andrewmusgrave/[email protected] | |
| with: | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| event: REQUEST_CHANGES | |
| body: "Increase test coverage from ${{ env.COVERAGE_PERCENT }}% to at least 90% before merging." | |
| - name: Approve PR if Coverage Sufficient | |
| if: ${{ env.COVERAGE_PERCENT > 89 }} | |
| uses: andrewmusgrave/[email protected] | |
| with: | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| event: APPROVE | |
| body: "Test coverage meets or exceeds 90% threshold (currently ${{ env.COVERAGE_PERCENT }}%)." | |
| ci-report-status: | |
| name: report CI status | |
| needs: [build-and-test, ipynb-ci] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: | | |
| result_1="${{ needs.build-and-test.result }}" | |
| result_2="${{ needs.ipynb-ci.result }}" | |
| if test $result_1 == "success" && test $result_2 == "success"; then | |
| exit 0 | |
| else | |
| exit 1 | |
| fi | |