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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 74 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 33 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 265 repositories
  • colormipsearch Public

    Distributed Color Depth MIP Search

    JaneliaSciComp/colormipsearch’s past year of commit activity
    Java 0 BSD-3-Clause 1 0 2 Updated Nov 11, 2024
  • zarrcade Public

    Create web-based OME-Zarr galleries

    JaneliaSciComp/zarrcade’s past year of commit activity
    Jupyter Notebook 8 BSD-3-Clause 0 3 0 Updated Nov 9, 2024
  • multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    JaneliaSciComp/multifish’s past year of commit activity
    Jupyter Notebook 33 BSD-3-Clause 13 19 0 Updated Nov 8, 2024
  • BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    JaneliaSciComp/BigStitcher-Spark’s past year of commit activity
    Java 19 BSD-2-Clause 10 15 1 Updated Nov 8, 2024
  • G4_Display_Tools Public

    Collection of tools for the G4 LED arena displays.

    JaneliaSciComp/G4_Display_Tools’s past year of commit activity
    MATLAB 2 CC-BY-4.0 2 10 0 Updated Nov 8, 2024
  • neuronbridge-precompute Public

    Utilities for indexing and transferring of NeuronBridge-related files

    JaneliaSciComp/neuronbridge-precompute’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Nov 8, 2024
  • RubinFlyDiscoSettings Public

    Rubin Lab settings folder for FlyDiscoAnalysis

    JaneliaSciComp/RubinFlyDiscoSettings’s past year of commit activity
    Shell 0 0 0 0 Updated Nov 8, 2024
  • ossi-website Public

    Website showcasing Janelia Open Science Software Intiative (OSSI) supported software projects and other software developed at Janelia.

    JaneliaSciComp/ossi-website’s past year of commit activity
    Astro 1 BSD-3-Clause 17 16 2 Updated Nov 8, 2024
  • PyWaveSurfer Public

    PyWaveSurfer is a Python package for reading WaveSurfer data files in Python.

    JaneliaSciComp/PyWaveSurfer’s past year of commit activity
    Python 9 6 1 7 Updated Nov 8, 2024
  • SongExplorer Public

    deep learning for acoustic signals

    JaneliaSciComp/SongExplorer’s past year of commit activity
    Python 23 BSD-3-Clause 5 5 1 Updated Nov 6, 2024
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