fix: handle BerkeleyJE DB interruption [tp-tests]

[tien]

Currently, any interruption to BerkeleyJE DB will cause Janusgraph to stop working entirely & require a complete restart of Janusgraph. This PR will make it so interruption to BerkeleyJE DB will close & reopen the Berkeley's environment instead.

Fixes #2120

[linux-foundation-easycla]

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• ✅ login: tien / name: Tiến Nguyễn Khắc (4b86cbd)

[tien]

@porunov @li-boxuan struggling on how to test this, the test that I copied from #3990 pass but when I check it actually doesn't do anything.

[tien]

Update: I was able to write a test to consistently trigger the error n prove that my change should work.

[tien]

Have made a change to only re/initialize on interruption.

[tien]

Oops, forgot to enable my test since it works now, have done so.

[tien]

@li-boxuan @porunov all tests passed, can you guys take a look 👀? Keen to get this merged soon 💪.

[li-boxuan]

I am sorry but I seem to have missed some context. Do you know why @mad 's previous PR didn't pass the test, and what did you do differently to solve the problem?

[tien]

I am sorry but I seem to have missed some context. Do you know why @mad 's previous PR didn't pass the test, and what did you do differently to solve the problem?

@li-boxuan I'm not sure why that one didn't pass the test. I'm using a completely different approach in this PR that involves a lot less changes.

[mad]

Thanks for your contribution!

For proper testing, you need to disable test filtering here, here and here

To be completely correct, you still need to enabld this (supportsInterruption)

[tien]

Thank you @mad, I have committed the suggested changes.

[tien]

Thanks for your contribution!

For proper testing, you need to disable test filtering here, here and here

To be completely correct, you still need to enabld this (supportsInterruption)

@mad Look like doing this will actually fail the tests.

I think it's because BerkeleyJE DB technically still does not support interruption, as in it will throw an error upon being interrupted. We are only reopening the environment here so that future requests won't all fail.

[tien]

@mad @li-boxuan I have implemented the interruption retry logic.

[tien]

Have made the best effort implementation, so BerkeleyJE DB environment will be reset after interruption & also that race condition around thread are covered so that the interruption test from tp-test will always works.

[tien]

@li-boxuan @porunov all tests passed :D

There's the coverage check, but I don't think I can get it any higher though, cuz a lot of the uncovered code are catch clauses. Which are impossible to trigger consistently.

[li-boxuan]

Codecov sometimes seems buggy and we don't know why. Don't worry about that. Congrats on passing all tests! @mad would you be able to take another look?

[mad]

Thanks for finishing the job!

[tien]

Awesome, thanks for all the helps and supports guys 🙏

[li-boxuan]

I am gonna merge this following lazy merge consensus. Thank you @tien for fixing this!

[janusgraph-automations]

💚 All backports created successfully

Status	Branch	Result
✅	v1.0

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[porunov]

After merging this PR tp-tests are not failing in master branch for berkleyje.

Error:  Errors: 
Error:  org.apache.tinkerpop.gremlin.process.traversal.TraversalInterruptionTest.shouldRespectThreadInterruptionInVertexStep[expectInterruption(g_V_outE)]
[INFO]   Run 1: PASS
Error:    Run 2: TraversalInterruptionTest>AbstractGremlinTest.tearDown:155 » LockTimeout (JE 18.3.12) Lock expired. Locker 1229014061 2150_main_Txn: waited for lock on database=_jeNameMap LockAddr:617727493 LSN=0x0/0x1167 type=WRITE grant=WAIT_NEW timeoutMillis=500 startTime=1715693374163 endTime=1715693374663

I will try to re-run those tests again. If they don't pass we should revert this commit.

[tien]

After merging this PR tp-tests are not failing in master branch for berkleyje.

Error:  Errors: 
Error:  org.apache.tinkerpop.gremlin.process.traversal.TraversalInterruptionTest.shouldRespectThreadInterruptionInVertexStep[expectInterruption(g_V_outE)]
[INFO]   Run 1: PASS
Error:    Run 2: TraversalInterruptionTest>AbstractGremlinTest.tearDown:155 » LockTimeout (JE 18.3.12) Lock expired. Locker 1229014061 2150_main_Txn: waited for lock on database=_jeNameMap LockAddr:617727493 LSN=0x0/0x1167 type=WRITE grant=WAIT_NEW timeoutMillis=500 startTime=1715693374163 endTime=1715693374663

I will try to re-run those tests again. If they don't pass we should revert this commit.

I'm pretty sure this is just a flaky error due to Berkeley DB can't handle many concurrent reads/writes, which now happen cuz we no longer exclude it from some of the tests.

Like I can see that this pass https://github.com/JanusGraph/janusgraph/actions/runs/9075171201/job/24965523610
But this run got the time-out error https://github.com/JanusGraph/janusgraph/actions/runs/9075171201/job/24965524860

Look like a whole other issue: #1623

[porunov]

After merging this PR tp-tests are not failing in master branch for berkleyje.

Error:  Errors: 
Error:  org.apache.tinkerpop.gremlin.process.traversal.TraversalInterruptionTest.shouldRespectThreadInterruptionInVertexStep[expectInterruption(g_V_outE)]
[INFO]   Run 1: PASS
Error:    Run 2: TraversalInterruptionTest>AbstractGremlinTest.tearDown:155 » LockTimeout (JE 18.3.12) Lock expired. Locker 1229014061 2150_main_Txn: waited for lock on database=_jeNameMap LockAddr:617727493 LSN=0x0/0x1167 type=WRITE grant=WAIT_NEW timeoutMillis=500 startTime=1715693374163 endTime=1715693374663

I will try to re-run those tests again. If they don't pass we should revert this commit.

I'm pretty sure this is just a flaky error due to Berkeley DB can't handle many concurrent reads/writes, which now happen cuz we no longer exclude it from some of the tests.

Like I can see that this pass https://github.com/JanusGraph/janusgraph/actions/runs/9075171201/job/24965523610 But this run got the time-out error https://github.com/JanusGraph/janusgraph/actions/runs/9075171201/job/24965524860

Look like a whole other issue: #1623

Yes, tests for berkeleyje with Java 8 passed after restart, but failed again for Java 11. I restarted the job again for Java 11.
We should probably increase those timeouts as I see timeoutMillis=500 which is probably isn't enough for berkeleyje in GitHub Actions sometimes.

[tien]

@porunov I can see that it failed again :(

It's like a flaky race condition where the test try to create an entirely new Berkeley DB graph when the previous one is still invalid/re-intializing (Probably due to the lock issue). This isn't handled by this PR: the BerkeleyDB store doesn't have control over other instances created before or after it.

This won't happen in production because you'll most likely & should have only one Janusgraph with Berkeley DB instance up and running.

Maybe we should just continue what we did before and disable this particular test for BerkeleyDB?

Or push on with the flaky test, It has always pass for me when I run this locally :p

[tien]

Though like you said @porunov increasing the lock time-out might just make this problem go away :p

[porunov]

This PR is going to be reverted in #4702 after I unsure that the revert fixed tp-tests. If anyone wish to keep the changes in this PR, feel free to resolve broken tp-tests for BerkeleyJE storage backend.