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diag of SparseMatrixCSC should always return SparseVector (#23261)
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* diag of SparseMatrixCSC should always return SparseVector

* remove SpDiagIterator
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fredrikekre authored Aug 18, 2017
1 parent 88a553a commit 5fd053f
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Showing 4 changed files with 49 additions and 27 deletions.
2 changes: 2 additions & 0 deletions NEWS.md
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Expand Up @@ -312,6 +312,8 @@ Deprecated or removed
* `Base.cpad` has been removed; use an appropriate combination of `rpad` and `lpad`
instead ([#23187]).

* `Base.SparseArrays.SpDiagIterator` has been removed ([#23261]).

Command-line option changes
---------------------------

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2 changes: 1 addition & 1 deletion base/sparse/linalg.jl
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Expand Up @@ -879,7 +879,7 @@ for f in (:\, :Ac_ldiv_B, :At_ldiv_B)
if m == n
if istril(A)
if istriu(A)
return ($f)(Diagonal(A), B)
return ($f)(Diagonal(Vector(diag(A))), B)
else
return ($f)(LowerTriangular(A), B)
end
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51 changes: 25 additions & 26 deletions base/sparse/sparsematrix.jl
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Expand Up @@ -3380,40 +3380,39 @@ function expandptr(V::Vector{<:Integer})
res
end

## diag and related using an iterator

mutable struct SpDiagIterator{Tv,Ti}
A::SparseMatrixCSC{Tv,Ti}
n::Int
end
SpDiagIterator(A::SparseMatrixCSC) = SpDiagIterator(A,minimum(size(A)))

length(d::SpDiagIterator) = d.n
start(d::SpDiagIterator) = 1
done(d::SpDiagIterator, j) = j > d.n

function next(d::SpDiagIterator{Tv}, j) where Tv
A = d.A
r1 = Int(A.colptr[j])
r2 = Int(A.colptr[j+1]-1)
(r1 > r2) && (return (zero(Tv), j+1))
r1 = searchsortedfirst(A.rowval, j, r1, r2, Forward)
(((r1 > r2) || (A.rowval[r1] != j)) ? zero(Tv) : A.nzval[r1], j+1)
function diag(A::SparseMatrixCSC{Tv,Ti}, d::Integer=0) where {Tv,Ti}
m, n = size(A)
k = Int(d)
if !(-m <= k <= n)
throw(ArgumentError("requested diagonal, $k, out of bounds in matrix of size ($m, $n)"))
end
l = k < 0 ? min(m+k,n) : min(n-k,m)
r, c = k <= 0 ? (-k, 0) : (0, k) # start row/col -1
ind = Vector{Ti}()
val = Vector{Tv}()
for i in 1:l
r += 1; c += 1
r1 = Int(A.colptr[c])
r2 = Int(A.colptr[c+1]-1)
r1 > r2 && continue
r1 = searchsortedfirst(A.rowval, r, r1, r2, Forward)
((r1 > r2) || (A.rowval[r1] != r)) && continue
push!(ind, i)
push!(val, A.nzval[r1])
end
return SparseVector{Tv,Ti}(l, ind, val)
end

function trace(A::SparseMatrixCSC{Tv}) where Tv
if size(A,1) != size(A,2)
throw(DimensionMismatch("expected square matrix"))
end
n = checksquare(A)
s = zero(Tv)
for d in SpDiagIterator(A)
s += d
for i in 1:n
s += A[i,i]
end
s
return s
end

diag(A::SparseMatrixCSC{Tv}) where {Tv} = Tv[d for d in SpDiagIterator(A)]

function diagm(v::SparseMatrixCSC{Tv,Ti}) where {Tv,Ti}
if size(v,1) != 1 && size(v,2) != 1
throw(DimensionMismatch("input should be nx1 or 1xn"))
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21 changes: 21 additions & 0 deletions test/sparse/sparse.jl
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Expand Up @@ -1323,6 +1323,27 @@ end
@test diagm(sparse(ones(5,1))) == speye(5)
end

@testset "diag" begin
for T in (Float64, Complex128)
S1 = sprand(T, 5, 5, 0.5)
S2 = sprand(T, 10, 5, 0.5)
S3 = sprand(T, 5, 10, 0.5)
for S in (S1, S2, S3)
A = Matrix(S)
@test diag(S)::SparseVector{T,Int} == diag(A)
for k in -size(S,1):size(S,2)
@test diag(S, k)::SparseVector{T,Int} == diag(A, k)
end
@test_throws ArgumentError diag(S, -size(S,1)-1)
@test_throws ArgumentError diag(S, size(S,2)+1)
end
end
# test that stored zeros are still stored zeros in the diagonal
S = sparse([1,3],[1,3],[0.0,0.0]); V = diag(S)
@test V.nzind == [1,3]
@test V.nzval == [0.0,0.0]
end

@testset "expandptr" begin
A = speye(5)
@test Base.SparseArrays.expandptr(A.colptr) == collect(1:5)
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