neurosynth_analysis

The scripts in this script prepare a map to be uploaded to neurosynth and generate a wordcloud of neurosynth terms.

1. Prepare your data: You will need a table where each row is a a value to be analyzed. The scripts here assume that your data is in HCP parcellation.
2. Create the map to be uploaded: Run create_upload_map.m, changing the paths to load in your data.
3. Upload the generated map to Neurosynth.
4. Run 'Decode' - 'Cognitive Terms' on Neurosynth.
5. Copy and paste (yes, this is how annoying it gets!) the terms and their weights into a table, one column for the terms, one for their associated weights.
6. Clean your table of terms. I.e. delete anatomical terms, and potentially duplicate terms.
7. Create a worcloud of your terms by running neurosynth_wordcloud.R.