Bump dependencies for NumPy 2 compatibility

[cbrnr]

All tests pass and demo.ipynb works without any errors or warnings using NumPy >= 2.

[cbrnr]

OK, I'm struggling a bit with dependencies here. If you want to keep Python >= 3.9 and at the same time also support 3.13, scipy >= 1.13.1 works only for Python <= 3.12. Strangely, uv does not use scipy 1.14.1 (there is no binary wheel for scipy 1.13.1 for Python 3.13) for Python 3.13, but insists on using 1.13.1...

[bemoody]

Sure, seems like the problem is that "uv run --extra dev pytest" is doing something bizarre.

I don't know exactly what that command is doing or trying to do, but it seems to be trying to install the oldest versions of packages that satisfy our dependencies. That is not what we want (that's not what any normal user does) and is not likely to lead to a good solution.

[cbrnr]

It might actually be something at the core of how uv resolves dependencies, yes. I've opened an issue here: astral-sh/uv#8492

[YmirKhang]

Hells yeah!