[Tech] Bump the pip group in /datascience with 5 updates

[dependabot]

Bumps the pip group in /datascience with 5 updates:

Package	From	To
certifi	2024.2.2	2024.7.4
fiona	1.9.6	1.10.0
tornado	6.4	6.4.1
urllib3	2.2.1	2.2.2
zipp	3.19.0	3.19.1

Updates certifi from 2024.2.2 to 2024.7.4

Commits

• bd81538 2024.07.04 (#295)
• 06a2cbf Bump peter-evans/create-pull-request from 6.0.5 to 6.1.0 (#294)
• 13bba02 Bump actions/checkout from 4.1.6 to 4.1.7 (#293)
• e8abcd0 Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0 (#292)
• 124f4ad 2024.06.02 (#291)
• c2196ce --- (#290)
• fefdeec Bump actions/checkout from 4.1.4 to 4.1.5 (#289)
• 3c5fb15 Bump actions/download-artifact from 4.1.6 to 4.1.7 (#286)
• 4a9569a Bump actions/checkout from 4.1.2 to 4.1.4 (#287)
• 1fc8086 Bump peter-evans/create-pull-request from 6.0.4 to 6.0.5 (#288)
• Additional commits viewable in compare view

Updates fiona from 1.9.6 to 1.10.0

Release notes

Sourced from fiona's releases.

1.10.0

This is 1.10.0. At last! The project has added 25 new contributors since 1.9.0, for a total of 73.

Fiona 1.10 will continue to support classic GIS programming work with a record-style data model. Rows, that is, not columns.

The changes since 1.9.6 are fully described in the changelog, split across pre-releases. Here is a high-level summary.

Deprecations

• Python-style filter expressions for CLI commands are being replaced by Lisp-like expressions.
• Some constants in the fiona.schema module will be removed in a future version.
• The fiona.path module will be removed in a future version. This, and the previously mentioned constants, were not meant to be used by projects downstream.

New features

• Python openers can connect filesystems implemented in Python, like fsspec or tiledb.vfs, to GDAL's own virtual filesystem machinery. In most cases, you should reply on GDAL's built-in virtual filesystem handlers. On the other hand, if you have unique or proprietary data access protocols, then fiona's new openers may be useful.
• Fiona's CLI has three new commands, filter (strictly speaking, a new mode of this command), map, and reduce. These provide some great features for Unix-style data processing pipelines and are designed to work well with jq and programs of that nature.

Other changes

This version is heavily refactored. If it's not paying off for you, let us know!

PyPI wheels

The binary wheels on PyPI include GDAL 3.9.2 (3.9.1 for Windows), GEOS 3.11.2, and PROJ 9.4.1.

GDAL and Python versions

Fiona 1.10.0 requires GDAL 3.4 and Python 3.8 or newer.

1.10.0rc1

This is the first release candidate for 1.10.0.

Changes

• Mutable item access to Feature, Geometry, and Properties instances has been restored (reported in #1430). This usage should be avoided as instances of these classes will be immutable in a future version.
• The setup.cfg duplicates project configuration in pyproject.toml and has been removed.

Packaging

• PyPI wheels include GDAL 3.9.2.

Please see the CHANGES file for a more detailed enumeration of changes since version 1.10b1. Unless showstopper bugs are found in this release, expect a final 1.10.0 release in two weeks.

1.10b3

Bug fixes

• The sketchy, semi-private Python opener interfaces of version 1.10b2 have been replaced by ABCs that are exported from fiona.abc (#1415). How to implement the interfaces and provide a custom opener is documented in test_pyopener.py and will be included in the documentation for version 1.10.0.
• The truncate GDAL VSI plugin callback has been implemented (#1413).

... (truncated)

Changelog

Sourced from fiona's changelog.

1.10.0 (2024-09-03)

The package version, credits, and citation file have been updated. There have been no other changes since 1.10.0rc1. Fiona is the work of 73 contributors, including 25 new contributors since 1.9.0.

1.10.0rc1 (2024-08-21)

This is the first release candidate for 1.10.0.

Changes:

• Mutable item access to Feature, Geometry, and Properties instances has been restored (reported in #1430). This usage should be avoided as instances of these classes will be immutable in a future version.
• The setup.cfg duplicates project configuration in pyproject.toml and has been removed.

1.10b3 (2024-07-29)

Bug fixes:

• The sketchy, semi-private Python opener interfaces of version 1.10b2 have been replaced by ABCs that are exported from fiona.abc (#1415).
• The truncate VSI plugin callback has been implemented (#1413).

1.10b2 (2024-07-10)

Bug fixes:

• The Pyopener registry and VSI plugin have been rewritten to avoid filename conflicts and to be compatible with multithreading. Now, a new plugin handler is registered for each instance of using an opener (#1408). Before GDAL 3.9.0 plugin handlers cannot not be removed and so it may be observed that the size of the Pyopener registry grows during the execution of a program.
• A CSLConstList ctypedef has been added and is used where appropriate (#1404).
• Fiona model objects have a informative, printable representation again (#1380).

Packaging:

• PyPI wheels include GDAL 3.9.1 and curl 8.8.0.

1.10b1 (2024-04-16)

... (truncated)

Commits

• cc16f66 This is 1.10.0
• 09ffe32 Update 1.10.0rc1 release date
• e7acafe Remove experimental wheel build infra
• 6bf2bf7 Restore mutable item access to Properties
• 103c11f Add custom triplets
• 7946354 Add vcpkg.json
• 6e4a6d1 Move tests
• dce31ea cd before running tests
• 14cac4f Run tests from right location
• bbd9842 Provide GDAL version
• Additional commits viewable in compare view

Updates tornado from 6.4 to 6.4.1

Changelog

Sourced from tornado's changelog.

Release notes

.. toctree:: :maxdepth: 2

releases/v6.4.1 releases/v6.4.0 releases/v6.3.3 releases/v6.3.2 releases/v6.3.1 releases/v6.3.0 releases/v6.2.0 releases/v6.1.0 releases/v6.0.4 releases/v6.0.3 releases/v6.0.2 releases/v6.0.1 releases/v6.0.0 releases/v5.1.1 releases/v5.1.0 releases/v5.0.2 releases/v5.0.1 releases/v5.0.0 releases/v4.5.3 releases/v4.5.2 releases/v4.5.1 releases/v4.5.0 releases/v4.4.3 releases/v4.4.2 releases/v4.4.1 releases/v4.4.0 releases/v4.3.0 releases/v4.2.1 releases/v4.2.0 releases/v4.1.0 releases/v4.0.2 releases/v4.0.1 releases/v4.0.0 releases/v3.2.2 releases/v3.2.1 releases/v3.2.0 releases/v3.1.1 releases/v3.1.0 releases/v3.0.2 releases/v3.0.1 releases/v3.0.0 releases/v2.4.1 releases/v2.4.0 releases/v2.3.0

... (truncated)

Commits

• 2a0e1d1 Merge pull request #3388 from bdarnell/release-641
• b7af4e8 Release notes and version bump for version 6.4.1
• d65f6e7 Merge pull request #3387 from bdarnell/chunked-parsing
• 8d721a8 httputil: Only strip tabs and spaces from header values
• 7786f09 Merge pull request #3386 from bdarnell/curl-crlf
• fb119c7 http1connection: Stricter handling of transfer-encoding
• b0ffc58 curl_httpclient,http1connection: Prohibit CR and LF in headers
• 0efa9a4 Merge pull request #3385 from bdarnell/update-black
• 2757c6e Merge pull request #3384 from tornadoweb/dependabot/pip/requests-2.32.2
• 291d1b6 *: Update black
• Additional commits viewable in compare view

Updates urllib3 from 2.2.1 to 2.2.2

Release notes

Sourced from urllib3's releases.

2.2.2

🚀 urllib3 is fundraising for HTTP/2 support

urllib3 is raising ~$40,000 USD to release HTTP/2 support and ensure long-term sustainable maintenance of the project after a sharp decline in financial support for 2023. If your company or organization uses Python and would benefit from HTTP/2 support in Requests, pip, cloud SDKs, and thousands of other projects please consider contributing financially to ensure HTTP/2 support is developed sustainably and maintained for the long-haul.

Thank you for your support.

Changes

• Added the Proxy-Authorization header to the list of headers to strip from requests when redirecting to a different host. As before, different headers can be set via Retry.remove_headers_on_redirect.
• Allowed passing negative integers as amt to read methods of http.client.HTTPResponse as an alternative to None. (#3122)
• Fixed return types representing copying actions to use typing.Self. (#3363)

Full Changelog: urllib3/urllib3@2.2.1...2.2.2

Changelog

Sourced from urllib3's changelog.

2.2.2 (2024-06-17)

• Added the Proxy-Authorization header to the list of headers to strip from requests when redirecting to a different host. As before, different headers can be set via Retry.remove_headers_on_redirect.
• Allowed passing negative integers as amt to read methods of http.client.HTTPResponse as an alternative to None. ([#3122](https://github.com/urllib3/urllib3/issues/3122) <https://github.com/urllib3/urllib3/issues/3122>__)
• Fixed return types representing copying actions to use typing.Self. ([#3363](https://github.com/urllib3/urllib3/issues/3363) <https://github.com/urllib3/urllib3/issues/3363>__)

Commits

• 27e2a5c Release 2.2.2 (#3406)
• accff72 Merge pull request from GHSA-34jh-p97f-mpxf
• 34be4a5 Pin CFFI to a new release candidate instead of a Git commit (#3398)
• da41058 Bump browser-actions/setup-chrome from 1.6.0 to 1.7.1 (#3399)
• b07a669 Bump github/codeql-action from 2.13.4 to 3.25.6 (#3396)
• b8589ec Measure coverage with v4 of artifact actions (#3394)
• f3bdc55 Allow triggering CI manually (#3391)
• 5239265 Fix HTTP version in debug log (#3316)
• b34619f Bump actions/checkout to 4.1.4 (#3387)
• 9961d14 Bump browser-actions/setup-chrome from 1.5.0 to 1.6.0 (#3386)
• Additional commits viewable in compare view

Updates zipp from 3.19.0 to 3.19.1

Changelog

Sourced from zipp's changelog.

v3.19.1

Bugfixes

• Improved handling of malformed zip files. (#119)

Commits

• 6d1cb72 Finalize
• fd604bd Merge pull request #120 from jaraco/bugfix/119-malformed-paths
• c18417e Add news fragment.
• 58115d2 Employ SanitizedNames in CompleteDirs. Fixes broken test.
• 564fcc1 Add SanitizedNames mixin.
• 79a309f Add some assertions about malformed paths.
• 2d015c2 Merge https://github.com/jaraco/skeleton
• a595a0f Rename extras to align with core metadata spec.
• See full diff in compare view

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[sonarcloud]

Quality Gate passed

Issues
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Measures
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See analysis details on SonarCloud