fix consensus function

MangiolaLaboratory · Oct 7, 2024 · 2a00719 · 2a00719
1 parent a43a6cb
commit 2a00719
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Showing 3 changed files with 810 additions and 729 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -18,6 +18,7 @@ export(annotation_consensus)
 export(annotation_label_transfer)
 export(calculate_pseudobulk)
 export(cell_cycle_scoring)
+export(clean_cellxgene_cell_types)
 export(convert_gene_names)
 export(create_pseudobulk)
 export(delete_lines_with_word)
@@ -192,6 +193,7 @@ importFrom(stringr,str_c)
 importFrom(stringr,str_detect)
 importFrom(stringr,str_remove)
 importFrom(stringr,str_remove_all)
+importFrom(stringr,str_replace)
 importFrom(stringr,str_replace_all)
 importFrom(stringr,str_subset)
 importFrom(stringr,str_trim)

diff --git a/R/differential_expression.R b/R/differential_expression.R
@@ -282,10 +282,10 @@ factory_de_fix_effect = function(se_list_input, output_se, formula, method, tier
 
 #' @importFrom rlang sym
 #' @importFrom dplyr left_join
-#' @importFrom dplyr nest
+#' @importFrom tidyr nest
 #' @importFrom dplyr group_by
 #' @importFrom dplyr mutate
-#' @importFrom dplyr unnest
+#' @importFrom tidyr unnest
 #' @importFrom purrr map
 #' @importFrom S4Vectors split
 #' @importFrom purrr compact