fix cores for tests

MangiolaLaboratory · Nov 15, 2023 · 4b167df · 4b167df
1 parent 8678561
commit 4b167df
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/R/methods.R b/R/methods.R
@@ -467,7 +467,7 @@ sccomp_estimate.data.frame = function(.data,
 #'    count,
 #'     cores = 1
 #'   ) |>
-#'   sccomp_remove_outliers()
+#'   sccomp_remove_outliers(cores = 1)
 #'
 #' @export
 #'

diff --git a/man/sccomp_remove_outliers.Rd b/man/sccomp_remove_outliers.Rd
diff --git a/tests/testthat/test-sccomp_.R b/tests/testthat/test-sccomp_.R
@@ -141,7 +141,7 @@ test_that("outliers",{
 
 
   my_estimate |>
-    sccomp_remove_unwanted_variation(formula_composition = ~ type)
+    sccomp_remove_outliers(cores = 1)
 
 })
 
@@ -448,10 +448,10 @@ test_that("test constrasts",{
       formula_composition = ~ type ,
       formula_variability = ~ 1,
       sample, cell_group,
-      check_outliers = FALSE,
       approximate_posterior_inference = FALSE,
       cores = 1,
-      mcmc_seed = 42,       max_sampling_iterations = 1000
+      mcmc_seed = 42,      
+      max_sampling_iterations = 1000
     )
 
   new_test =