Merge pull request #359 from MannLabs/model-evaluation-docs

Guid for evaluation transfer learning performance
MannLabs · Oct 28, 2024 · 6ebe1cd · 6ebe1cd
2 parents c47718b + 9b84db7
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diff --git a/docs/guides.md b/docs/guides.md
@@ -6,33 +6,20 @@
 
 Library-free DIA <guides/libfree-gui>
 DIA Transfer Learning <guides/transfer-dimethyl>
+Evaluate Transfer Learning <guides/evaluate_model>
 
 ```
 
 
 Below you will find a collection of guides how to use and configure alphaDIA for specific searches.
 
-```{card} Library based DIA search
-:link: https://example.com
-Use the AlphaDIA GUI to train a custom peptdeep model for dimethyl labeled DIA data.
-
-{bdg-success}`GUI`
-```
-
 ```{card} Library free DIA search using the GUI
 :link: guides/libfree-gui.html
 Perform a DIA search of label free bulk data usinmg a fully predicted spectral library from a FASTA digest.
 
 {bdg-success}`GUI`
 ```
 
-```{card} Library free DIA search using a Jupyter notebook
-:link: https://example.com
-Perform a DIA search of label free bulk data usinmg a fully predicted spectral library from a FASTA digest.
-
-{bdg-warning}`Jupyter Notebook`
-```
-
 ```{card} DIA Transfer Learning for Dimethyl labeled samples
 :link: guides/transfer-dimethyl.html
 Use the AlphaDIA GUI to train a custom peptdeep model for dimethyl labeled DIA data.
@@ -41,16 +28,9 @@ The custom model is then used to search non-multiplexed dimethyl labeled data wi
 {bdg-success}`GUI` {bdg-primary}`Transfer Learning`
 ```
 
-```{card} DIA transfer learning with an existing training library
-:link: https://example.com
-Use the AlphaDIA GUI to train a custom peptdeep model for dimethyl labeled DIA data.
-
-{bdg-warning}`Jupyter Notebook` {bdg-primary}`Transfer Learning`
-```
-
-```{card} Evaluate a PeptDeep model for a training task
-:link: https://example.com
-Use the AlphaDIA GUI to train a custom peptdeep model for dimethyl labeled DIA data.
+```{card} Evaluate Transfer Learning Metrics
+:link: guides/evaluate_model.html
+Evaluate the transfer learning by visualizing the metrics for the RT, Charge, Mobility and MS2 prediction tasks.
 
 {bdg-warning}`Jupyter Notebook` {bdg-primary}`Transfer Learning`
 ```
diff --git a/docs/guides/evaluate_model.ipynb b/docs/guides/evaluate_model.ipynb
diff --git a/requirements/requirements_docs.txt b/requirements/requirements_docs.txt
@@ -5,3 +5,4 @@ nbsphinx
 myst_parser
 sphinx_design
 furo
+pandoc