wg-blimp v0.10.0

Inclusion of gemBS, thanks to @JakeLehle !

wg-blimp v0.9.10

This release includes a fixed broken Picard environment usage.

wg-blimp v0.9.9

This small release fixes incompatibilities between HPC and "regular" server systems caused by previous inclusion of mamba and the most recent release of openssl 3.0.

wg-blimp v0.9.8

Implemented cluster mode by delegating the respective CLI option to Snakemake.

wg-blimp v0.9.7

Move to per-task conda environments instead of global dependency installation. This removes a lot of conda conflicts and provides more overall stability.

wg-blimp-v0.9.6

Next release of wg-blimp. Changes:

• Reworked annotation: Now, arbitrary species can be used with general GTF support
• Added optional sample .csv file for FASTQ management
• Fixed several bugs

wg-blimp-v0.9.5

Change R package installation to be lazily installed upon first pipeline execution

wg-blimp-v0.9.4

Now wg-blimp includes MethylSeekR!

wg-blimp-v0.9.3

Fix qualimap coverage report

wg-blimp-v0.9.2

Squashed commit of the following:

commit 7aa576c725374a1c3c84945b9c9e1de879c049f3
Author: Marius Wöste <[email protected]>
Date:   Mon Apr 8 15:26:35 2019 +0200

    Replace tag with short SHA

commit 49acb06c29867eb5297edca66587a66af7b4bd9d
Author: Marius Wöste <[email protected]>
Date:   Mon Apr 8 15:24:39 2019 +0200

    Replace git call with .gitlab-ci env variable

commit 190da500951b8e74876ee95b4b0f3ec44382bb0a
Author: Marius Wöste <[email protected]>
Date:   Mon Apr 8 15:19:11 2019 +0200

    Fix .gitlab-ci.yml syntax

commit 203c66097c1f5f7862eafe20285b6cdc5222f9d9
Author: Marius Wöste <[email protected]>
Date:   Mon Apr 8 15:15:42 2019 +0200

    Add .gitlab-ci