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监视：BA.2.86*中国境内进展 #54

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Memorablea opened this issue Oct 30, 2023 · 23 comments · Fixed by #85
Closed

监视：BA.2.86*中国境内进展 #54

Memorablea opened this issue Oct 30, 2023 · 23 comments · Fixed by #85
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BA.2.86 WHO VOI / Nextstrain Clade "23I" / Gregory Nickname "Pirola" 国内/China 重点关注/Focused

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@Memorablea
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Memorablea commented Oct 30, 2023 •
edited by Over-There-Is
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病例

Shanghai/SCDC-HG0908-3457/2023|EPI_ISL_18284814|2023-09-05，上海市，日本输入
BA.2.86.1> C26078T(Orf3a:T229I)> A10199C(Orf1a:M3312L)

Hong Kong/VK23013838/2023|EPI_ISL_18366378|2023-09-09，香港特别行政区 荃湾区
BA.2.86.1>C364T > C912A(Orf1a:S216Y), A14960T(Orf1b:N498I), C25350T(S:P1263L)

Fujian/FCDC-XM091701HG/2023|EPI_ISL_18330328|2023-09-17，福建省厦门市，台湾地区输入
JN.2> G29513T(N:A414S)> A21137G(Orf1b:K2557R), T22238C, C25714T(Orf3a:L108F)

Taiwan/CDC-W33195/2023|EPI_ISL_18458013|2023-10-20，台湾地区，日本输入
JN.1>T27056C
@Memorablea Memorablea added this to the GISAID milestone Oct 30, 2023
@Memorablea Memorablea mentioned this issue Oct 31, 2023
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Memorablea commented Nov 5, 2023 •
edited by Over-There-Is
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Shanghai/SCDC-HG1013-3778/2023|EPI_ISL_18465327|2023-10-11
JN.1.1> A4912G, T16461C
from Switzerland

Shanghai/SCDC-HG1013-3785/2023|EPI_ISL_18465331|2023-10-12
JN.1> C774T(Orf1a:T170I)> T18453C> C28201T(Orf8:S103L)
from UAE

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BA.2.86.1> T11614C> G29449T
Shanghai/SCDC-XG10-14573/2023|EPI_ISL_18475209|2023-10-08

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Over-There-Is commented Nov 17, 2023 •
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如未注明，BA.2.86.1均默认指其C12815T分支

Yunnan/YNCDC-3270/2023|EPI_ISL_18488081|2023-10-23 云南省
BA.2.86.1> C7528T> G12332A(Orf1a:A4023T)> T28693C> C16409T(Orf1b:T981I)

Singapore/R78MR55/2023|EPI_ISL_18445258|2023-10-23 中国内地输出新加坡
JN.1.1> C21654T(S:S31F), C29311T

Singapore/R80MR71/2023|EPI_ISL_18473622|2023-10-31 中国香港输出新加坡
BA.2.86.1> C364T> C22993T> C2044A(Orf1a:N593K), G8353A, G25644A

Shanghai/SCDC-XG10-14798/2023|EPI_ISL_18495093|2023-10-16 上海市
BA.2.86.1> C364T> C22993T> A6777T(Orf1a:Y2171F), C12049T

Taiwan/CDC-C20439/2023 台湾地区
BA.2.86.1> C21034T(Orf1b:L2523F)> G1709A(Orf1a:A482T)

Taiwan/CDC-W33479/2023|EPI_ISL_18496174|2023-10-30 台湾地区越南输入
JN.2> G28378T> G3065A(Orf1a:G934S), C9491T(Orf1a:H3076Y)

Taiwan/CDC-W33590/2023|EPI_ISL_18496189|2023-11-03 台湾地区捷克输入
JN.1> G9424T, C15240T

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Shanghai/SCDC-HG1027-3869/2023|EPI_ISL_18518355|2023-10-25 上海市，荷兰输入
JN.1> C1060T> A28104G(Orf8:I71V)> A3061G
Shanghai/SCDC-HG1027-3871/2023|EPI_ISL_18518357|2023-10-25 上海市，德国输入
BA.2.86.1> T11614C> G29449T> C8266T
Shanghai/SCDC-HG1031-3888/2023|EPI_ISL_18518369|2023-10-29 上海市，澳大利亚输入
JN.1> A9935G(Orf1a:T3224A)> A964G
Shanghai/SCDC-HP-XG-1017-1/2023|EPI_ISL_18518388|2023-10-17 上海市黄浦区，本土
JN.3> C11575T> T27794C> G25687A(Orf3a:A99T)

@Memorablea Memorablea changed the title 监视：BA.2.86*中国境内进展 监视：BA.2.86*中国境内进展（18 seqs，6 本土） Nov 19, 2023
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Hong_Kong/VK23014485/2023|EPI_ISL_18526591|2023-10-10 香港特别行政区 深水埗区
BA.2.86.1> T11614C> C12085T

@Memorablea Memorablea changed the title 监视：BA.2.86*中国境内进展（18 seqs，6 本土） 监视：BA.2.86*中国境内进展（19 seqs，7 本土） Nov 23, 2023
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Taiwan/CDC-W33635/2023 台湾地区 芬兰输入
BA.2.86.3> C541T, C1528T, C11824T, A17267G(Orf1b:D1267G)> C6318T(Orf1a:P2018L), C11454T(Orf1a:A3730V), A25697T

@Memorablea Memorablea changed the title 监视：BA.2.86*中国境内进展（19 seqs，7 本土） 监视：BA.2.86*中国境内进展（20 seqs，7 本土） Nov 25, 2023
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Over-There-Is commented Nov 27, 2023 •
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Singapore/R85MR29/2023|EPI_ISL_18544491|2023-11-16 中国台湾输出新加坡
BA.2.86.1> C21034T(Orf1b:L2523F)> T3049C, G8102A(Orf1a:V2613I), G10943A(Orf1a:V3560I), C18086T(Orf1b:T1540I)> A19946G(Orf1b:K2160R)
Singapore/R85MR222/2023|EPI_ISL_18544582|2023-11-19 中国台湾输出新加坡
JN.1.1> G1730A(Orf1a:E489K), C6494A(Orf1a:L2077I)

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福建省福州市 台湾地区输入

Fujian/FCDC-FZ1512076401/2023|EPI_ISL_18556237|2023-11-09
Fujian/FCDC-FZ1512078401/2023|EPI_ISL_18556239|2023-11-09
JN.1> C9246T(Orf1a:A2994V), G20521A(Orf1b:D2352N)

Fujian/FCDC-FZ1512078001/2023|EPI_ISL_18556238|2023-11-09
JN.1> C9246T(Orf1a:A2994V), G20521A(Orf1b:D2352N)> C27532T(Orf7a:H47Y)

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Memorablea commented Dec 6, 2023 •
edited by Over-There-Is
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福建省+1
Fujian/FCDC-XM112805HG/2023|EPI_ISL_18580633|2023-11-22 福建省厦门市 澳大利亚输入
JN.1> T18471C> G15380T(Orf1b:S638I), A25575C(Orf3a:K61N)

台湾地区+5
Taiwan/CDC-W33951/2023|EPI_ISL_18591961|2023-11-13 越南输入
JN.1
Taiwan/CDC-W33907/2023|EPI_ISL_18591959|2023-11-12 泰国输入
JN.1> T18471C> C1441T
Taiwan/CDC-F89587/2023|EPI_ISL_18591954|2023-11-12
JN.1
Taiwan/CDC-F89584/2023|EPI_ISL_18591952|2023-11-10
JN.1> T18471C
Taiwan/CDC-W34185/2023|EPI_ISL_18591942|2023-11-22 菲律宾输入
JN.1.1> C9142T

@Memorablea Memorablea changed the title 监视：BA.2.86*中国境内进展（20 seqs，7 本土） 监视：BA.2.86*中国境内进展（20 seqs，7 本土，关联） Dec 6, 2023
@Memorablea Memorablea changed the title 监视：BA.2.86*中国境内进展（20 seqs，7 本土，关联） 监视：BA.2.86*中国境内进展（20 seqs，7 本土，输出） Dec 6, 2023
@Over-There-Is Over-There-Is changed the title 监视：BA.2.86*中国境内进展（20 seqs，7 本土，输出） 监视：BA.2.86*中国境内进展（9本土，18输入，5输出） Dec 7, 2023
@Over-There-Is Over-There-Is changed the title 监视：BA.2.86*中国境内进展（9本土，18输入，5输出） 监视：BA.2.86*中国境内进展（12本土，18输入，5输出） Dec 8, 2023
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Hong_Kong/VK23014552/2023|EPI_ISL_18598209|2023-11-14 香港特别行政区 元朗区
JN.1> A25327G> C10279T, T14440C(Orf1b:F325L)
Hong_Kong/VK23014566/2023|EPI_ISL_18598211|2023-10-30 香港特别行政区 湾仔区
JN.2> T1030C> G20578T(Orf1b:V2371L), A29437G> C5175T(Orf1a:T1637I)
Hong_Kong/VK23014564/2023|EPI_ISL_18598210|2023-11-4 香港特别行政区 东区
JN.3> C2939T(Orf1a:P892S)> C29171T(N:H300Y)> C13517T(Orf1b:T17I), T24079C

@Memorablea Memorablea pinned this issue Dec 10, 2023
@Over-There-Is Over-There-Is changed the title 监视：BA.2.86*中国境内进展（12本土，18输入，5输出） 监视：BA.2.86*中国境内进展（13本土，18输入，5输出） Dec 11, 2023
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Hong_Kong/HKUSPH_VOC2249P3/2023|EPI_ISL_18604378|2023-06-16 香港 南区 疑似日期误标
BA.2.86> C9226T> G14347A(Orf1b:D294N)> C15108T> G1820A(Orf1a:G519S), T2277C(Orf1a:I671T), C4679T(Orf1a:P1472S), C6031T, A10518G(Orf1a:D3418G), T29454C

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Over-There-Is commented Dec 12, 2023 •
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Fujian/FCDC-XM120605HG/2023|EPI_ISL_18608338|2023-12-05 福建省厦门市 新加坡输入
Fujian/FCDC-XM120607HG/2023|EPI_ISL_18608343|2023-12-05 福建省厦门市 澳大利亚输入
JN.1> G17278A(Orf1b:V1271T), T17279C(Orf1b:V1271T)> C5986T> T4265C, C8092T

Fujian/FCDC-XM120604HG/2023|EPI_ISL_18608336|2023-12-04 福建省厦门市 新加坡输入
JN.1.1>C9142T> C4540T, T17886A> C1825T, T3265C, G9841A, C27425T(Orf7a:T11I)

Singapore/R89MR154/2023|EPI_ISL_18604700|2023-12-01 中国台湾输出新加坡
JN.1> G17278A(Orf1b:V1271T), T17279C(Orf1b:V1271T)> C5986T

Singapore/R88MR37/2023|EPI_ISL_18611744|2023-11-28 中国内地输出新加坡
JN.1> G12907A> C5826T(Orf1a:T1854I), G7723A

@Over-There-Is Over-There-Is changed the title 监视：BA.2.86*中国境内进展（13本土，18输入，5输出） 监视：BA.2.86*中国境内进展（13本土，21输入，7输出） Dec 12, 2023
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Memorablea commented Dec 15, 2023 •
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上海海关+12
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_68e1_c20140.json?f_userOrOld=uploaded%20sample&label=id:node_1315228
image

@Memorablea Memorablea changed the title 监视：BA.2.86*中国境内进展（13本土，21输入，7输出） 监视：BA.2.86*中国境内进展（13本土，33输入，7输出） Dec 15, 2023
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Shanghai/SCDC-HG1123-4011/2023|EPI_ISL_18633998|2023-11-21 丹麦输入
JN.1.1> C9142T> G12070T> T1182C(Orf1a:V306A), C20389T(Orf1b:R2308C)

Shanghai/SCDC-HG1123-4016/2023|EPI_ISL_18634011|2023-11-21 德国输入
JN.1.1> C9142T> A15162G

Shanghai/SCDC-HG1123-4014/2023|EPI_ISL_18634017|2023-11-21 英国输入
JN.1.1> C11758T, T25631C(Orf3a:V80A), G25699T(Orf3a:A103S)

Shanghai/SCDC-HG1125-4026/2023|EPI_ISL_18634005|2023-11-23 新加坡输入
Shanghai/SCDC-HG1125-4029/2023|EPI_ISL_18634027|2023-11-23 新加坡输入
JN.1> G17278A(Orf1b:V1271T), T17279C(Orf1b:V1271T)> C5986T

Shanghai/SCDC-HG1125-4030/2023|EPI_ISL_18634015|2023-11-23 新加坡输入
JN.1> C774T(Orf1a:T170I)> T18453C> C28201T(Orf3a:S108L)> C28948T> C12778T> T14349A(Orf1b:D294E)

Shanghai/SCDC-HG1126-4039/2023|EPI_ISL_18633990|2023-11-24 俄罗斯输入
JN.1> C23896G> C20823T

Shanghai/SCDC-HG1128-4052/2023|EPI_ISL_18633992|2023-11-26 法国输入
JN.1> A6393G(Orf1a:D2043G), T11891C, T28135C(Orf8:V81A)

Shanghai/SCDC-HG1124-4023/2023|EPI_ISL_18634016|2023-11-22 德国输入
JN.1> G18803T(Orf1b:S1779I)

Shanghai/SCDC-HG1128-4053/2023|EPI_ISL_18633994|2023-11-26 阿联酋输入
JN.1

Shanghai/SCDC-HG1124-4020/2023|EPI_ISL_18634026|2023-11-22 泰国输入
BA.2.86.1> C29614T> C23601T(S:S680F)> C1282T, T15114C, C24863T(S:S1101Y)

Shanghai/SCDC-HG1128-4047/2023|EPI_ISL_18634028|2023-11-26 越南输入
BA.2.86.2 > T1507C

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Memorablea commented Dec 17, 2023 •
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链接到https://github.com/Memorablea/COVID-19-/blob/Covid/BA.2.86.*%20from%20China.md ，此问题与.md文件保持更新

@Over-There-Is Over-There-Is changed the title 监视：BA.2.86*中国境内进展（13本土，33输入，7输出） 监视：BA.2.86*中国境内进展（13本土，38输入，9输出） Dec 19, 2023
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Fujian/FCDC-XM121302HG/2023|EPI_ISL_18647481|2023-12-06 from Singapore
BA.2.86.1>G26101A(Orf3a:V237I), G26109T(Orf3a:E239D)

Fujian/FCDC-XM121306HG/2023|EPI_ISL_18647482|2023-12-11 from Australia
BA.2.86.1> C26801T potential JN.1 dropout

Fujian/FCDC-XM121303HG/2023|EPI_ISL_18647483|2023-12-06 from Singapore
BA.2.86.1> C26801T>T27810C(Orf7a:F19L) potential JN.1 dropout

Fujian/FCDC-XM121304HG/2023|EPI_ISL_18647485|2023-12-11 from Indonesia
BA.2.86.1> C18894T> C7279T potential JN.1 dropout

Fujian/FCDC-XM121305HG/2023|EPI_ISL_18647486|2023-12-11 from Malaysia
BA.2.86.1> C18894T> T8004A(Orf1a:V2580D) potential JN.1 dropout

Singapore/R92MR41/2023|EPI_ISL_18651325|2023-12-11 from Taiwan, China
JN.1> C774T(Orf1a:T170I)> T18453C> C28201T(Orf3a:S108L)> C28948T> T7434C(Orf1a:F2390S), C16362T, A19212G

Singapore/R91MR99/2023|EPI_ISL_18651236|2023-12-07 from China(Mainland)
JN.1> C774T(Orf1a:T170I)> T18453C> C28201T(Orf3a:S108L)> C28948T

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USA/CA-GBW-H20-345-2232/2023|EPI_ISL_18656976|2023-12-09 from Taiwan, China
JN.1> C774T(Orf1a:T170I)> T18453C> G13427A(Orf1a:E4388K)> C2268T(Orf1a:A668V), G6358T(Orf1a: E2031D), A13308G(Orf1a:K4348R), T26182C(Orf3a:Y264H)

@Memorablea Memorablea changed the title 监视：BA.2.86*中国境内进展（13本土，38输入，9输出） 监视：BA.2.86*中国境内进展（16本土，56输入，15输出） Dec 22, 2023
@Memorablea Memorablea added the BA.2.86 WHO VOI / Nextstrain Clade "23I" / Gregory Nickname "Pirola" label Dec 22, 2023
@Memorablea Memorablea removed this from the GISAID milestone Dec 22, 2023
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Over-There-Is commented Dec 22, 2023 •
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Shanghai/SCDC-HG1204-4100/2023|EPI_ISL_18672168|2023-12-03 from UK
JN.1.1> C9142T

Shanghai/SCDC-HG1205-4105/2023|EPI_ISL_18672172|2023-12-03 from Philippines
JN.1.1> C9142T> G7829A(Orf1a:V2511I)

Shanghai/SCDC-HG1201-4077/2023|EPI_ISL_18672152|2023-11-29 from Netherlands
JN.1.1> C9142T> A79T, C1960T, C3653A(Orf1a:L1130I)

Shanghai/SCDC-HG1202-4085/2023|EPI_ISL_18672157|2023-11-30 from Thailand
JN.1.1> C9142T> A29412T(N:Q380L)> C18693T, C23422T, A29700G> C13431T(Orf1a:P4389L)> G16914T

Shanghai/SCDC-HG1202-4081/2023|EPI_ISL_18672154|2023-11-30 from Japan
JN.1.1> C9166T> C12053T(Orf1a:L3930F)

Shanghai/SCDC-HG1205-4111/2023|EPI_ISL_18672177|2023-12-03 from HKSAR, China
JN.1> C774T(Orf1a:T170I)> T18453C

Shanghai/SCDC-HG1203-4089/2023|EPI_ISL_18672159|2023-12-01 from Germany
JN.1> C774T(Orf1a:T170I)> T18453C> C2536T, T21418C

Shanghai/SCDC-HG1204-4099/2023|EPI_ISL_18672167|2023-12-03 from UAE
JN.1> C774T(Orf1a:T170I)> T18453C> C12242T(Orf1a:R3993C)

Shanghai/SCDC-HG1204-4096/2023|EPI_ISL_18672164|2023-12-03 from Germany
JN.1> C774T(Orf1a:T170I)> T18453C> C15277T(Orf1b:H604Y)

Shanghai/SCDC-HG1205-4109/2023|EPI_ISL_18672175|2023-12-03 from Singapore
JN.1> C774T(Orf1a:T170I)> T18453C> C28201T(Orf3a:S108L)> C28948T> A22116C(S:N185T)

Shanghai/SCDC-HG1201-4074/2023|EPI_ISL_18672150|2023-11-29 from UAE
JN.1> C19186T, G25429T(Orf3a:V13L)> C18687T> A385T> G28347A(N:G25D, Orf9b:A22T)

Shanghai/SCDC-HG1202-4083/2023|EPI_ISL_18672156|2023-11-30 from France
JN.1> T18738A(Orf1b:F1757L)

Shanghai/SCDC-HG1205-4110/2023|EPI_ISL_18672176|2023-12-03 from Singapore
JN.1> G17278A(Orf1b:V1271T), T17279C(Orf1b:V1271T)> C5986T> C2485T, A16305G

Yunnan/YNCDC-3532/2023|EPI_ISL_18672386|2023-12-01
JN.1> C1593T(Orf1a:S443F), A19960G(Orf1b:T2165A)

Shanghai/SCDC-HG1203-4091/2023|EPI_ISL_18672161|2023-12-01 from Netherlands
JN.2> C3736T

Yunnan/YNCDC-3493/2023|EPI_ISL_18672347|2023-11-27
JN.2> G28378T(Orf9b:R32L)> C2005T, C21846T(S:T95I), T27618C, A28877T, G28878C

Shanghai/SCDC-HG1202-4082/2023|EPI_ISL_18672155|2023-11-30 from South Korea
BA.2.86.1> C2388T(Orf1a:T708I)

Shanghai/SCDC-HG1129-4060-2/2023|EPI_ISL_18672141|2023-11-27 from Japan
BA.2.86.1> T11614C> G29449T

Yunnan/YNCDC-3495/2023|EPI_ISL_18672349|2023-11-27
BA.2.86.1> G24872T(S:V1104L)> C657T(Orf1a:A131V), G27762T(Orf7b:E3*)

Shanghai/SCDC-HG1204-4097/2023|EPI_ISL_18672165|2023-12-03 from Germany
BA.2.86.1> C27679T(Orf7a:L96F)> C25803T

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Fujian/FCDC-XM121904HG/2023|EPI_ISL_18686288|2023-12-15 from Italy
JN.1

USA/WA-GBW-H20-345-3230/2023|EPI_ISL_18685166|2023-12-14 from China(Mainland)
JN.1

Fujian/FCDC-XM121903HG/2023|EPI_ISL_18686287|2023-12-15 from Singapore
JN.1> G17278A(Orf1b:V1271T), T17279C(Orf1b:V1271T)> C5986T> T6724C> G17523T(Orf1b:M1352I)

Fujian/FCDC-FZ15293816/2023|EPI_ISL_18686285|2023-12-16 from Taiwan, China
JN.1> C774T(Orf1a:T170I)> T18453C> C28201T(Orf8:S103L)> A8420G(Orf1a:M2719V)> G12566A(Orf1a:V4101T), G26167T(Orf3a:V259L)

Fujian/FCDC-XM121906HG/2023|EPI_ISL_18686290|2023-12-18 from Australia
JN.1> C24034T> A29700G> C19545T, C24370T> C5184T(Orf1a:P1640L)> T10084A, C23277T(S:T572I)

South_Korea/KDCA278107/2023|EPI_ISL_18687609|2023-12-10 from China(Mainland)
JN.1> C774T(Orf1a:T170I)> T18453C> C28201T(Orf8:S103L)> T25842C> T24607C, C26044G(Orf3a:Q218E)

USA/CA-GBW-H20-353-2173/2023|EPI_ISL_18685169|2023-12-13 from Taiwan, China
JN.1.1> C9142T> T27772C(Orf7b:L6S)

@Over-There-Is Over-There-Is changed the title 监视：BA.2.86*中国境内进展（16本土，56输入，15输出） 监视：BA.2.86*中国境内进展（16本土，58输入，12输出） Dec 28, 2023
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Singapore/R94MR134/2023|EPI_ISL_18701018|2023-12-18 from China(Mainland)
BA.2.86.1> C29614T> C23601T(S:S680F)> T19893A(Orf1b:D2142E)> A1365G(Orf1a:K367R), C5979T(Orf1a:S1905F)> G25494T> C2788T, T24046C(S:P1263L), C25350T

Singapore/R93MR123/2023|EPI_ISL_18700929|2023-12-13 from Taiwan, China
JN.1> C774T(Orf1a:T170I)> T18453C> C28201T(Orf3a:S108L)> C28948T

@Over-There-Is Over-There-Is changed the title 监视：BA.2.86*中国境内进展（16本土，58输入，12输出） 监视：BA.2.86*中国境内进展（16本土，58输入，14输出） Dec 29, 2023
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hCoV-19/Shanghai/SCDC-HG1207-4128/2023 | EPI_ISL_18703818 | 2023-12-05 JN.1 from Thailand
hCoV-19/Shanghai/SCDC-HG1208-4134/2023 | EPI_ISL_18703824 | 2023-12-06 JN.1.1 from Philippines
hCoV-19/Shanghai/SCDC-HG1208-4142/2023 | EPI_ISL_18703830 | 2023-12-06 BA.2.86.1 from Turkey
hCoV-19/Shanghai/SCDC-HG1209-4148/2023 | EPI_ISL_18703834 | 2023-12-07 JN.1 from Japan
hCoV-19/Shanghai/SCDC-HG1211-4165/2023 | EPI_ISL_18703840 | 2023-12-09 JN.1 from Thailand
hCoV-19/Shanghai/SCDC-HG1211-4172/2023 | EPI_ISL_18703847 | 2023-12-10 JN.1 from Malaysia
hCoV-19/Shanghai/SCDC-HG1212-4183/2023 | EPI_ISL_18703855 | 2023-12-10 JN.1 from Philippines

@Memorablea Memorablea changed the title 监视：BA.2.86*中国境内进展（16本土，58输入，14输出） 监视：BA.2.86*中国境内进展（16本土，65输入，14输出） Jan 6, 2024
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hCoV-19/Shanghai/SCDC-HG1213-4187/2023 EPI_ISL_18769844 2023-12-11 Asia / China / Shanghai Human Male 32 unknown Original Pharyngeal swab Patient infected while traveling in South Korea JN.1
hCoV-19/Shanghai/SCDC-HG1213-4189/2023 EPI_ISL_18769846 2023-12-11 Asia / China / Shanghai Human Female 24 unknown Original Pharyngeal swab Patient infected while traveling in Unite States JN.1
hCoV-19/Shanghai/SCDC-HG1213-4192/2023 EPI_ISL_18769849 2023-12-11 Asia / China / Shanghai Human Male 49 unknown Original Pharyngeal swab Patient infected while traveling in Germany JN.1
hCoV-19/Shanghai/SCDC-HG1213-4193/2023 EPI_ISL_18769850 2023-12-11 Asia / China / Shanghai Human Female 38 unknown Original Pharyngeal swab Patient infected while traveling in Australia JN.2
hCoV-19/Shanghai/SCDC-HG1213-4194/2023 EPI_ISL_18769851 2023-12-11 Asia / China / Shanghai Human Female 17 unknown Original Pharyngeal swab Patient infected while traveling in New Zealand JN.1.1
hCoV-19/Shanghai/SCDC-HG1214-4195/2023 EPI_ISL_18769852 2023-12-12 Asia / China / Shanghai Human Male 65 unknown Original Pharyngeal swab Patient infected while traveling in Singapore
hCoV-19/Shanghai/SCDC-HG1215-4196/2023 EPI_ISL_18769853 2023-12-13 Asia / China / Shanghai Human Male 51 unknown Original Pharyngeal swab Patient infected while traveling in Unite States
hCoV-19/Shanghai/SCDC-HG1215-4197/2023 EPI_ISL_18769854 2023-12-13 Asia / China / Shanghai Human Female 21 unknown Original Pharyngeal swab Patient infected while traveling in Britain
hCoV-19/Shanghai/SCDC-HG1215-4198/2023 EPI_ISL_18769855 2023-12-13 Asia / China / Shanghai Human Female 24 unknown Original Pharyngeal swab Patient infected while traveling in Britain
hCoV-19/Shanghai/SCDC-HG1215-4199/2023 EPI_ISL_18769856 2023-12-13 Asia / China / Shanghai Human Male 34 unknown Original Pharyngeal swab Patient infected while traveling in the People’s Republic of Bangladesh JN.1
hCoV-19/Shanghai/SCDC-HG1216-4203/2023 EPI_ISL_18769860 2023-12-14 Asia / China / Shanghai Human Male 27 unknown Original Pharyngeal swab Patient infected while traveling in South Korea JN.1.1
hCoV-19/Shanghai/SCDC-HG1216-4204/2023 EPI_ISL_18769861 2023-12-14 Asia / China / Shanghai Human Male 45 unknown Original Pharyngeal swab Patient infected while traveling in Taiwan, China JN.1.9
hCoV-19/Shanghai/SCDC-HG1216-4206/2023 EPI_ISL_18769863 2023-12-14 Asia / China / Shanghai Human Male 59 unknown Original Pharyngeal swab Patient infected while traveling in Turkey JN.1
hCoV-19/Shanghai/SCDC-HG1216-4207/2023 EPI_ISL_18769864 2023-12-14 Asia / China / Shanghai Human Male 30 unknown Original Pharyngeal swab Patient infected while traveling in Thailand JN.1.4
hCoV-19/Shanghai/SCDC-HG1217-4209/2023 EPI_ISL_18769866 2023-12-15 Asia / China / Shanghai Human Female 27 unknown Original Pharyngeal swab Patient infected while traveling in Italy JN.1
hCoV-19/Shanghai/SCDC-HG1217-4210/2023 EPI_ISL_18769867 2023-12-15 Asia / China / Shanghai Human Male 35 unknown Original Pharyngeal swab Patient infected while traveling in Italy JN.1
hCoV-19/Shanghai/SCDC-HG1217-4211/2023 EPI_ISL_18769868 2023-12-15 Asia / China / Shanghai Human Male 47 unknown Original Pharyngeal swab Patient infected while traveling in Singapore JN.1.6.1
hCoV-19/Shanghai/SCDC-HG1217-4212/2023 EPI_ISL_18769869 2023-12-15 Asia / China / Shanghai Human Female 48 unknown Original Pharyngeal swab Patient infected while traveling in Britain JN.1.1.1
hCoV-19/Shanghai/SCDC-HG1217-4213/2023 EPI_ISL_18769870 2023-12-15 Asia / China / Shanghai Human Male 33 unknown Original Pharyngeal swab Patient infected while traveling in Singapore JN.1.5
hCoV-19/Shanghai/SCDC-HG1217-4214/2023 EPI_ISL_18769871 2023-12-15 Asia / China / Shanghai Human Male 33 unknown Original Pharyngeal swab Patient infected while traveling in the Netherlands JN.1
hCoV-19/Shanghai/SCDC-HG1217-4215/2023 EPI_ISL_18769872 2023-12-15 Asia / China / Shanghai Human Female 43 unknown Original Pharyngeal swab Patient infected while traveling in Singapore JN.1.4
hCoV-19/Shanghai/SCDC-HG1217-4216/2023 EPI_ISL_18769873 2023-12-15 Asia / China / Shanghai Human Male 20 unknown Original Pharyngeal swab Patient infected while traveling in Singapore JN.1.5
hCoV-19/Shanghai/SCDC-HG1218-4218/2023 EPI_ISL_18769874 2023-12-16 Asia / China / Shanghai Human Female 55 unknown Original Pharyngeal swab Patient infected while traveling in Hongkong, China JN.1
hCoV-19/Shanghai/SCDC-HG1219-4221/2023 EPI_ISL_18769876 2023-12-17 Asia / China / Shanghai Human Female 19 unknown Original Pharyngeal swab Patient infected while traveling in the Philippines JN.1.4
hCoV-19/Shanghai/SCDC-HG1219-4223/2023 EPI_ISL_18769877 2023-12-17 Asia / China / Shanghai Human Female 31 unknown Original Pharyngeal swab Patient infected while traveling in the Philippines JN.1.1
hCoV-19/Shanghai/SCDC-HG1219-4225/2023 EPI_ISL_18769878 2023-12-17 Asia / China / Shanghai Human Male 58 unknown Original Pharyngeal swab Patient infected while traveling in Russia JN.1
hCoV-19/Shanghai/SCDC-HG1219-4227/2023 EPI_ISL_18769880 2023-12-17 Asia / China / Shanghai Human Male 45 unknown Original Pharyngeal swab Patient infected while traveling in Israel JN.1
hCoV-19/Shanghai/SCDC-HG1219-4228/2023 EPI_ISL_18769881 2023-12-17 Asia / China / Shanghai Human Female 12 unknown Original Pharyngeal swab Patient infected while traveling in Singapore JN.1.1
hCoV-19/Shanghai/SCDC-HG1220-4233/2023 EPI_ISL_18769884 2023-12-18 Asia / China / Shanghai Human Female 29 unknown Original Pharyngeal swab Patient infected while traveling in Germany JN.1
hCoV-19/Shanghai/SCDC-HG1220-4234/2023 EPI_ISL_18769885 2023-12-18 Asia / China / Shanghai Human Female 56 unknown Original Pharyngeal swab Patient infected while traveling in Germany JN.1.1
hCoV-19/Shanghai/SCDC-HG1220-4235/2023 EPI_ISL_18769886 2023-12-18 Asia / China / Shanghai Human Female 31 unknown Original Pharyngeal swab Patient infected while traveling in the Netherlands JN.1
hCoV-19/Shanghai/SCDC-HG1220-4237/2023 EPI_ISL_18769888 2023-12-18 Asia / China / Shanghai Human Male 63 unknown Original Pharyngeal swab Patient infected while traveling in Hongkong, China JN.1
hCoV-19/Shanghai/SCDC-HG1220-4240/2023 EPI_ISL_18769890 2023-12-18 Asia / China / Shanghai Human Female 52 unknown Original Pharyngeal swab Patient infected while traveling in The United Arab Emirates JN.1
ale 49 unknown Original Pharyngeal swab Patient infected while traveling in Singapore JN.1.5
hCoV-19/Shanghai/SCDC-HG1220-4242/2023 EPI_ISL_18769892 2023-12-18 Asia / China / Shanghai Human Male 34 unknown Original Pharyngeal swab Patient infected while traveling in Malaysia JN.1.5
hCoV-19/Shanghai/SCDC-HG1220-4243/2023 EPI_ISL_18769893 2023-12-18 Asia / China / Shanghai Human Male 35 unknown Original Pharyngeal swab Patient infected while traveling in the Netherlands JN.1
hCoV-19/Shanghai/SCDC-HG1220-4244/2023 EPI_ISL_18769894 2023-12-18 Asia / China / Shanghai Human Male 27 unknown Original Pharyngeal swab Patient infected while traveling in Malaysia JN.1
hCoV-19/Shanghai/SCDC-HG1220-4245/2023 EPI_ISL_18769895 2023-12-18 Asia / China / Shanghai Human Male 32 unknown Original Pharyngeal swab Patient infected while traveling in Germany JN.1
hCoV-19/Shanghai/SCDC-HG1220-4247/2023 EPI_ISL_18769897 2023-12-18 Asia / China / Shanghai Human Male 35 unknown Original Pharyngeal swab Patient infected while traveling in Saudi Arabia JN.1.5
hCoV-19/Shanghai/SCDC-HG1220-4248/2023 EPI_ISL_18769898 2023-12-18 Asia / China / Shanghai Human Male 35 unknown Original Pharyngeal swab Patient infected while traveling in Germany JN.1
hCoV-19/Shanghai/SCDC-HG1220-4249/2023 EPI_ISL_18769899 2023-12-18 Asia / China / Shanghai Human Female 66 unknown Original Pharyngeal swab Patient infected while traveling in Italy JN.1
hCoV-19/Shanghai/SCDC-HG1221-4251/2023 EPI_ISL_18769901 2023-12-19 Asia / China / Shanghai Human Female 18 unknown Original Nasopharyngeal swab Patient infected while traveling in Japan JN.1.4
hCoV-19/Shanghai/SCDC-HG1221-4252/2023 EPI_ISL_18769902 2023-12-19 Asia / China / Shanghai Human Male 33 unknown Original Pharyngeal swab Patient infected while traveling in Hongkong, China JN.1.1
hCoV-19/Shanghai/SCDC-HG1221-4253/2023 EPI_ISL_18769903 2023-12-19 Asia / China / Shanghai Human Male 28 unknown Original Pharyngeal swab Patient infected while traveling in Thailand JN.1
hCoV-19/Shanghai/SCDC-HG1221-4254/2023 EPI_ISL_18769904 2023-12-19 Asia / China / Shanghai Human Male 30 unknown Original Pharyngeal swab Patient infected while traveling in Russia JN.1.1
hCoV-19/Shanghai/SCDC-HG1221-4255/2023 EPI_ISL_18769905 2023-12-19 Asia / China / Shanghai Human Female 22 unknown Original Pharyngeal swab Patient infected while traveling in France

@Over-There-Is Over-There-Is changed the title 监视：BA.2.86*中国境内进展（16本土，65输入，14输出） 监视：BA.2.86*中国境内进展（48本土，141输入，30输出） Jan 16, 2024
@Over-There-Is Over-There-Is changed the title 监视：BA.2.86*中国境内进展（48本土，141输入，30输出） 监视：BA.2.86*中国境内进展（50本土，141输入，40输出） Jan 17, 2024
@Memorablea Memorablea reopened this Feb 2, 2024
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Memorablea commented Feb 2, 2024 •
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gisaid_hcov-19_2024_02_02_05.txt

2024年2月1日上传的34例本土序列
湖北+22（2/XDD），安徽+4 辽宁+4 福建+5

@Memorablea Memorablea changed the title 监视：BA.2.86*中国境内进展（50本土，141输入，40输出） 监视：BA.2.86*中国境内进展 Feb 2, 2024
@Memorablea Memorablea unpinned this issue Mar 17, 2024
@Memorablea Memorablea linked a pull request Mar 19, 2024 that will close this issue
Update BA.2.86.* from China.md #85
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@Memorablea Memorablea reopened this Mar 19, 2024
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Update BA.2.86.* from China.md Memorablea/COVID-19-
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