Lasr rename #345
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Lasr rename #345
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* chore: update gitignore * remove precompilation * wip: get many parts of expression interface working * get more parts working for parametric expressions * fix constant optimization for expressions * various fixes for expressions * fix other parts of expression interface * specialize operators * wip: almost working creation * more parts working * fix up other parts of parametric expression * create mutate constant for parameters * fix strings * fix strings * formatting * fix complexity * chore: bump DynamicExpressions * feat: undo abstract expression changes to InterfaceDynamicExpressions * feat: add index parameter for Dataset * feat: set node_type based on expression_type * feat: export node_type * generalize initialization for expressions * add example of parameterized functions * formatting * fix various issues with expressions * user expressions on regular trees * fix various issues with expressions in tests * turn back on precompilation * fix conversion steps * fix bug introduced by `get_tree_from_member` * fix symbolic import * missing union * switch to zygote for optimization * feat: allow user-specified autodiff backend; finite or zygote * feat: add TODO item * refactor: use callable structs rather than anonymous functions * test: run parametrized function example * ci: split up tests into three parts * test: fix jet error * feat: use DifferentiationInterface.jl for AD backend * run parametrized_function example for test * fix: `default_node -> default_node_type` * feat: allow symbol for autodiff backend * chore: set version to alpha instead * test: commit Manifest to reference alpha DE * build: delete Manifest.toml * feat: better printing for halls of fame * style: remove extra space * refactor: improve printing of PopMember * refactor: avoid holding operators within expressions * refactor: rename expressions interface * fix: stripping of metadata in loaded state * test: fix stripping of metadata * fix: order of ParametricExpression arguments * test: declare instabilities * test: fix remaining issues with test * test: fix missing import * refactor: use correct interface option * chore: bump DynamicExpressions version * chore: bump SymbolicUtils * chore: fix symbolic regression version * test: fix test interference * test: fix stop on clock test * fix: jet issues with union splitting * test: skip jet test on 1.11 * fix: various method ambiguities * chore: update DE * fix: jet union split * fix: use of `simplify_tree!` * chore: bump DE version * feat: add classes feature to MLJ interface * fix: mlj interface for classes * refactor: move jet test to end * refactor: update MLJ scitype * style: clean up interface code * fix missing import * limit max calls in optimization * reduce `niterations` * split up MLJ test * split up test_mixed * speed up mixed test * add tags on integration tests * clean up test mixed util * float up redundant lines * simpler type assertion * tests of new print_tree behavior * test derivative helper functions * test other printing methods * test that new options dont change PopMember printout * full test of break random connection * test form_random_connection! * remove unused converter * smoke test for warm start parametrized function * add early_stop_condition to long mixed tests * fix parameterized function test * early stop condition for parameter test * make sure MLJ tests run * fix parametrized function test * avoid recursion with keyword args * add checks for classes in MLJ * clear all variables in test_params.jl * fix parametrized expressions being reset * fix parameterized function example not selecting last * fix: simplification within SingleIteration * test: gradients during optimization * test: fix parametrized function example * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * test: gradients of parametric expression * feat: get Zygote gradients working for `ParametricExpressions` * chore: bump DynamicExpression dependency * fix: ensure we continue in parametrized function test * chore: bump DE version * feat: better monitor of bottlenecks * feat: dont print occupation during warmup * feat: use `Threads.@spawn` over `@async` * feat: don't print worker occupation temporarily * feat: wip Enzyme support * feat: working Enzyme gradients in loss function * deps: add Enzyme to dependencies * test: update evaluator tests api calls * refactor: fix ambiguity * feat: Enzyme gradients for ParametricExpression * fix: move back to `@async` to fix race condition * test: only run Enzyme test on Julia 1.10 * feat: back to fast loss functions * feat: explicit stack size for Enzyme * feat: set stack size to 32 MB for Enzyme * ci: move Enzyme test to part 3 * test: skip Enzyme test on 1.11 * refactor: remove unused function * test: make stop condition earlier * test: fix env in mlj tests * test: avoid unicode line endings to fix JuliaSyntax bug * fix: type instability in `init_dummy_pops` This instability is seen only on some operating systems and Julia versions. * fix: more type stability for Enzyme * test: force specialized operators for Enzyme * fix: issue with outer threads loop * deps: update DynamicExpressions version * refactor: clean up stale imports with ExplicitImports.jl * feat: expose new `get_scalar_constants` and `set_scalar_constants!` * fix: ensure `dataset.weights` is copied for Enzyme analysis * refactor: only copy batched portion * hack: delete all old artifacts * ci: undo cache clearing * deps: bump DE with depwarn fix * feat: add new string representations via dispatch * refactor: `dataset.weights` not actually Enzyme issue * fix: avoid storing `StatsBase.Weights` within `Options` * fix: ensure we mark `@nospecialize`d argument as `@unstable` * fix: consistency checks in metadata stripping * fix: ignore functions in Enzyme and ChainRulesCore * fix: EnzymeRules marking * Revert "fix: EnzymeRules marking" This reverts commit 002df6d. * Revert "fix: ignore functions in Enzyme and ChainRulesCore" This reverts commit b4265c1. * ci: test Enzyme separately * ci: ensure Preferences.jl installed * Revert "ci: ensure Preferences.jl installed" This reverts commit eb7cde1. * Revert "ci: test Enzyme separately" This reverts commit 0d7fb80. * ci: skip Enzyme tests completely * refactor: create `@ignore`d code to appease static analysis * refactor: clean up constructor of options * refactor: clean up constraint constructor * refactor: reduce some specialization * test: ensure DynamicExpressions installed for preferences * fix: mistaken assertion * fix: repeated depwarns cause dict write error * fix: prevent bad RNGs in MLJ tests * test: improve parameterized function example * refactor: clean up imports * test: make clocked test use serial mode * test: ensure options are lighterweight for clock test * test: increase npop for mlj test that fails sometimes * feat: create `PerThreadCache` for efficient caching * refactor: use `PerThreadCache` for safe functions * build: specify preferences in project * deps: bump SymbolicUtils to 3 * deps: bump DynamicQuantities to 1 * deps: fix compat settings * deps: force SymbolicUtils 2+ * deps: fix issue with [compat] on older Julia * deps: add back old SymbolicUtils * deps: fix DE version * deps: skip ConstructionBase bug See JuliaObjects/ConstructionBase.jl#92 * deps: move ConstructionBase to extras * ci: force clear cache upon new Project.toml * deps: force ConstructionBase dependency to fix version * test: verbose printing of tests * test: make dimensional test reproducible * test: split up dimensional analysis tests * test: set up early stopping for test * test: note slow tests * test: fix missing operator * Lasr parametric expressions (#1) * base integration commit * add llm functions * update package name * Add prompts dir * minor bug fixes while getting code in working order * add integration tests --------- Co-authored-by: Arya Grayeli <[email protected]> --------- Co-authored-by: MilesCranmer <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Arya Grayeli <[email protected]>
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