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NCIPangea

NCI's Pipelines for the ANalysis of GEnomics dAta

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  1. XAVIER XAVIER Public

    Forked from CCBR/XAVIER

    An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH

    Python 1

  2. NCIPangea NCIPangea Public

  3. RENEE RENEE Public

    Forked from CCBR/RENEE

    A comprehensive quality-control and quantification RNA-seq pipeline

    Python

  4. ASPEN ASPEN Public

    Forked from CCBR/ASPEN

    CCBR pipeline for preliminary QC and peak calling from ATACseq datasets

    Shell

  5. CARLISLE CARLISLE Public

    Forked from CCBR/CARLISLE

    Cut And Run Analysis Pipeline

    Python

  6. CHAMPAGNE CHAMPAGNE Public

    Forked from CCBR/CHAMPAGNE

    CHromAtin iMmuno PrecipitAtion sequencinG aNalysis pipEline

    Nextflow

Repositories

Showing 7 of 7 repositories
  • RENEE Public Forked from CCBR/RENEE

    A comprehensive quality-control and quantification RNA-seq pipeline

    NCIPangea/RENEE’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Nov 8, 2024
  • XAVIER Public Forked from CCBR/XAVIER

    An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH

    NCIPangea/XAVIER’s past year of commit activity
    Python 1 MIT 3 0 0 Updated Nov 6, 2024
  • CRUISE Public Forked from CCBR/CRISPIN

    Crispr scReen seqUencIng analySis pipEline

    NCIPangea/CRUISE’s past year of commit activity
    Nextflow 0 MIT 3 0 0 Updated Oct 17, 2024
  • CARLISLE Public Forked from CCBR/CARLISLE

    Cut And Run Analysis Pipeline

    NCIPangea/CARLISLE’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Oct 15, 2024
  • CHAMPAGNE Public Forked from CCBR/CHAMPAGNE

    CHromAtin iMmuno PrecipitAtion sequencinG aNalysis pipEline

    NCIPangea/CHAMPAGNE’s past year of commit activity
    Nextflow 0 MIT 2 0 0 Updated Sep 13, 2024
  • ASPEN Public Forked from CCBR/ASPEN

    CCBR pipeline for preliminary QC and peak calling from ATACseq datasets

    NCIPangea/ASPEN’s past year of commit activity
    Shell 0 MIT 2 0 0 Updated Jan 25, 2024
  • NCIPangea Public
    NCIPangea/NCIPangea’s past year of commit activity
    0 MIT 0 1 0 Updated Jan 12, 2022

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