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Representing Sequencing Information and Genomic Data Files #23
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The KF FHIR team has curated modeling discussions on KFDRC FHIR Model Mappings. Through a series of extensive discussions, we decided to model the above entities and properties into two components, 1.
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2.
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Re Data type / file format for
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DRS is the GA4GH preferred mechanism to represent file objects: The Data Repository Service (DRS) API provides a generic interface to data repositories so data consumers, including workflow systems, can access data in a single, standardized way regardless of where it’s stored or how it’s managed. The primary functionality of DRS is to map a logical ID to a means for physically retrieving the data represented by the ID. -- data-repository-service-schemas FHIR representations of files associated with Study, Subject, Specimen will be more useful to downstream use cases if they contained DRS Attributes. A FSH extension of the original openapi definition:
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Adapted from From NIH-NCPI/ncpi-model-forge#23
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We have done a few iterations on this @liberaliscomputing could you provide a bit more details on our last version we're going to try for this?
cc @nicholasvk @youngnm @baileyckelly
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