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Update CMEPS #110

Merged
merged 552 commits into from
Feb 5, 2024
Merged

Update CMEPS #110

merged 552 commits into from
Feb 5, 2024
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Commits on Jan 11, 2023

  1. fix merge issues

    jedwards4b committed Jan 11, 2023
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  2. Merge pull request ESCOMP#337 from jedwards4b/esmf_multidriver

    redo multiinstance support
    jedwards4b authored Jan 11, 2023
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Commits on Jan 12, 2023

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  2. Merge pull request ESCOMP#338 from DeniseWorthen/feature/updcmeps

    update esmFldsExchange_nems for ungridded wave fields; fix incorrect units in mediator files
    jedwards4b authored Jan 12, 2023
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Commits on Jan 18, 2023

  1. updates to MEGAN namelist parser

            modified:   cesm/nuopc_cap_share/shr_expr_parser_mod.F90
            modified:   cesm/nuopc_cap_share/shr_megan_mod.F90
    fvitt committed Jan 18, 2023
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Commits on Jan 19, 2023

  1. log MEGAN settings

            modified:   cesm/nuopc_cap_share/shr_megan_mod.F90
    fvitt committed Jan 19, 2023
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  2. code clean up

            modified:   cesm/nuopc_cap_share/shr_megan_mod.F90
    fvitt committed Jan 19, 2023
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Commits on Jan 20, 2023

  1. Merge pull request ESCOMP#339 from fvitt/megan_expr

    Updates to the MEGAN specifier string parser
    jedwards4b authored Jan 20, 2023
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Commits on Jan 25, 2023

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  2. fix issues in merge

    jedwards4b committed Jan 25, 2023
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Commits on Jan 26, 2023

  1. Merge pull request ESCOMP#325 from jedwards4b/pio_asyncio_in_cmeps

    enable asyncio using pio
    ### Description of changes 
    Allows IO tasks to be independent of compute tasks in cesm
    
    ### Specific notes
    (testing in progress)
    Contributors other than yourself, if any:
    Depends on share (ESCOMP/CESM_share#37) and cime (ESMCI/cime#4340).  
    
    CMEPS Issues Fixed (include github issue #):
    
    Are changes expected to change answers? (specify if bfb, different at roundoff, more substantial) 
    
    Any User Interface Changes (namelist or namelist defaults changes)?
    
    ### Testing performed
    
    Testing performed if application target is CESM:
    - [ ] (recommended) CIME_DRIVER=nuopc scripts_regression_tests.py
       - machines:
       - details (e.g. failed tests):
    - [ ] (recommended) CESM testlist_drv.xml
       - machines and compilers:
       - details (e.g. failed tests):
    - [X] (optional) CESM prealpha test
       - machines and compilers cheyenne intel 
       - details (e.g. failed tests): results consistant with cesm2_3_alpha10d
    - [ ] (other) please described in detail
       - machines and compilers
       - details (e.g. failed tests):
    
    Testing performed if application target is UFS-coupled:
    - [ ] (recommended) UFS-coupled testing
       - description:
       - details (e.g. failed tests):
    
    Testing performed if application target is UFS-HAFS:
    - [X] (recommended) UFS-HAFS testing
       - description:
       - details (e.g. failed tests):
    
    ### Hashes used for testing:
    
    - [ ] CESM:
      - repository to check out: https://github.com/ESCOMP/CESM.git
      - branch/hash:
    - [ ] UFS-coupled, then umbrella repostiory to check out and associated hash:
      - repository to check out:
      - branch/hash:
    - [ ] UFS-HAFS, then umbrella repostiory to check out and associated hash:
      - repository to check out:
      - branch/hash:
    jedwards4b authored Jan 26, 2023
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Commits on Jan 30, 2023

  1. changes needed for CDEP PR ESCOMP#213

    Mariana Vertenstein committed Jan 30, 2023
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Commits on Jan 31, 2023

  1. added new auxiliary stream for ocn2med

    Mariana Vertenstein committed Jan 31, 2023
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Commits on Feb 1, 2023

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  2. Merge pull request ESCOMP#342 from jedwards4b/fix_multiinst_init

    fix the multi instance initialization
    jedwards4b authored Feb 1, 2023
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  3. Merge pull request ESCOMP#341 from mvertens/feature/cplhist_and_ocnim…

    …port
    
    changes needed for CDEPS PR ESCOMP#213
    jedwards4b authored Feb 1, 2023
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Commits on Feb 3, 2023

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  2. changes for lightning coupling

            new file:   cesm/nuopc_cap_share/shr_lightning_coupling_mod.F90
            modified:   cime_config/namelist_definition_drv_flds.xml
            modified:   mediator/esmFldsExchange_cesm_mod.F90
            modified:   mediator/fd_cesm.yaml
    fvitt committed Feb 3, 2023
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  3. Changed "atm_lightning_flash_freq" to "atm_provides_lightning"

            modified:   cesm/nuopc_cap_share/shr_lightning_coupling_mod.F90
            modified:   cime_config/namelist_definition_drv_flds.xml
    fvitt committed Feb 3, 2023
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  4. rename Sa_lght as Sa_lightning

            modified:   cime_config/namelist_definition_drv_flds.xml
            modified:   mediator/esmFldsExchange_cesm_mod.F90
            modified:   mediator/fd_cesm.yaml
    fvitt committed Feb 3, 2023
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  5. update to cmeps0.14.10

    fvitt committed Feb 3, 2023
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  6. Merge pull request ESCOMP#343 from jedwards4b/xgrid_and_maintask

    make xgrid default, handle main task for multidriver cases in esm_tim…
    jedwards4b authored Feb 3, 2023
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Commits on Mar 16, 2023

  1. Revert default aoflux_grid to ogrid

    xgrid was causing restart problems; revert this until we can solve those
    problems
    billsacks committed Mar 16, 2023
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  2. Merge pull request ESCOMP#344 from billsacks/revert_xgrid

    Revert default aoflux_grid to ogrid
    jedwards4b authored Mar 16, 2023
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Commits on Mar 22, 2023

  1. Remove unnecessary deallocate

    fieldNameList is not always allocated. We could wrap the deallocate in a
    conditional, but since allocatable arrays are automatically deallocated
    upon leaving a subroutine, this deallocate statement is unnecessary.
    billsacks committed Mar 22, 2023
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  2. Merge pull request ESCOMP#345 from billsacks/remove_unnecessary_deall…

    …ocate
    
    Remove unnecessary deallocate
    jedwards4b authored Mar 22, 2023
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Commits on Mar 23, 2023

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  2. Add MAX_CPUTASKS_PER_GPU_NODE XML variable

    Update nvhpc compiler for GPU settings
    Remove PGI compiler
    
    	modified:   cime_config/config_component.xml
    sjsprecious committed Mar 23, 2023
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Commits on Mar 24, 2023

  1. Remove default_values and valid_values for GPU_TYPE and GPU_OFFLOAD

    so that they could assign multiple values to the config_machines.xml
    file
    
    	modified:   cime_config/config_component.xml
    sjsprecious committed Mar 24, 2023
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Commits on Mar 27, 2023

  1. Merge remote-tracking branch 'origin/lightning_coupling' into cmeps0.…

    …14.18_lightning_coupling
    fvitt committed Mar 27, 2023
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Commits on Mar 28, 2023

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  2. Clean up comments

    There was already a comment claiming nitrogen deposition was being passed, so
    all I needed to add were the actual addfld_to(), addfld_from(), addmap_from(),
    and addmrg_to() calls.
    mnlevy1981 committed Mar 28, 2023
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Commits on Mar 29, 2023

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Commits on Apr 5, 2023

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  2. Merge pull request ESCOMP#358 from jedwards4b/aux_cam-to-aux_cmeps

    replace aux_cam with aux_cmeps in testlist
    jedwards4b authored Apr 5, 2023
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Commits on Apr 6, 2023

  1. Merge pull request ESCOMP#349 from mnlevy1981/send_ndep_to_ocn

    Send nitrogen deposition from atm to ocn
    jedwards4b authored Apr 6, 2023
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  2. Merge pull request ESCOMP#356 from mattldawson/develop-add-linked-libs

    add CAM linked lbs to exe build
    jedwards4b authored Apr 6, 2023
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Commits on Apr 7, 2023

  1. use updated error check and broadcast methods

            modified:   cesm/nuopc_cap_share/shr_lightning_coupling_mod.F90
    fvitt committed Apr 7, 2023
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Commits on Apr 12, 2023

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Commits on Apr 14, 2023

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Commits on Apr 17, 2023

  1. Merge pull request ESCOMP#361 from ekluzek/lndrofmapfilefix

    A fix for ESCOMP#346 so that LND2ROF_FMAPNAME will be used
    jedwards4b authored Apr 17, 2023
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Commits on Apr 19, 2023

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  2. Merge pull request ESCOMP#364 from jedwards4b/xgrid_reproducability_fix

    fix issue with xgrid reproducibility
    jedwards4b authored Apr 19, 2023
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Commits on Apr 20, 2023

  1. Merge pull request ESCOMP#347 from fvitt/cmeps0.14.18_lightning_coupling

    Cloud-to-ground lightning flash frequency coupling
    jedwards4b authored Apr 20, 2023
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Commits on Apr 25, 2023

  1. added wav/ice coupling

    mvertens committed Apr 25, 2023
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  2. merged to cmeps0.14.24

    mvertens committed Apr 25, 2023
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  3. Adding custom field subroutine for waves with cesm, based on equivale…

    …nt routine for ocn component
    phall-brown committed Apr 25, 2023
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Commits on Apr 26, 2023

  1. Revert "Substituting Foxx_taux for Faox_taux"

    This reverts commit d4b8441.
    phall-brown committed Apr 26, 2023
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  5. Merge pull request #1 from mvertens/feature/fix_wavice_coupling

    minor fixes for ww3/cice coupling and update of code to cmeps0.14.24.
    mvertens authored Apr 26, 2023
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Commits on Apr 28, 2023

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  2. Merge pull request #2 from mvertens/feature/remove_mct_from_share

    updates to remove mct_mod and all other mct related files from share/
    mvertens authored Apr 28, 2023
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  4. undo accidental commit

    jedwards4b committed Apr 28, 2023
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Commits on Apr 29, 2023

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Commits on May 1, 2023

  1. correct comment delimiter

    jedwards4b committed May 1, 2023
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  2. Merge pull request ESCOMP#369 from jedwards4b/Turn_OFF_HierarchyProtocol

    turn off HierarchyProtocol
    jedwards4b authored May 1, 2023
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  3. Merge pull request ESCOMP#368 from jedwards4b/improve_diag_salt_format

    Improve diag salt format
    jedwards4b authored May 1, 2023
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Commits on May 5, 2023

  1. removed unused variable

    mvertens committed May 5, 2023
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  3. Merge pull request #3 from mvertens/feature/remove_uneeded_xmlvars

    removed unneeded xml variables
    mvertens authored May 5, 2023
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  4. check for nans

    mvertens committed May 5, 2023
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  5. Merge pull request ESCOMP#376 from NorESMhub/noresm

    changes to bring cmeps up to date with changes in noresm
    jedwards4b authored May 5, 2023
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  6. refactored logic

    mvertens committed May 5, 2023
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Commits on May 6, 2023

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  2. Merge branch 'aux_cpl_hist_daily' of github.com:kdraeder/CMEPS into a…

    …ux_cpl_hist_daily
    
    Because git told me to do it.
    I'm trying to set up a remote to my new fork of CMEPS
    in order to push changes on the aux_cpl_hist_daily branch.
    kdraeder committed May 6, 2023
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Commits on May 8, 2023

  1. updated counters for nans

    mvertens committed May 8, 2023
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  3. fixed compilation bug

    mvertens committed May 8, 2023
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Commits on May 9, 2023

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Commits on May 10, 2023

  1. Merge pull request ESCOMP#377 from mvertens/feature/check_for_nans

    checking of nans in export field bundles
    jedwards4b authored May 10, 2023
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  6. sames should be samples

    jedwards4b committed May 10, 2023
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  7. wopen should return rc

    jedwards4b committed May 10, 2023
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Commits on May 11, 2023

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  2. Merge pull request ESCOMP#365 from jedwards4b/update_esmf_min_version

    update the minimum esmf version requirement
    jedwards4b authored May 11, 2023
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  5. remove unused variable

    jedwards4b committed May 11, 2023
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  6. Merge pull request #1 from jedwards4b/history_n

    make history_n integer variables
    kdraeder authored May 11, 2023
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  9. Merge pull request ESCOMP#380 from jedwards4b/cesmcoupledfix

    CESM_COUPLED should be CESMCOUPLED
    jedwards4b authored May 11, 2023
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  10. remove dead code

    jedwards4b committed May 11, 2023
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Commits on May 12, 2023

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  3. fix comments

    DeniseWorthen committed May 12, 2023
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  4. adjust indentation

    jedwards4b committed May 12, 2023
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Commits on May 15, 2023

  1. Merge pull request ESCOMP#378 from kdraeder/aux_cpl_hist_daily

    Aux cpl hist daily
    jedwards4b authored May 15, 2023
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Commits on May 16, 2023

  1. updates for new stresses sent to wave

    Mariana Vertenstein committed May 16, 2023
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  2. merged to head of escomp/main

    Mariana Vertenstein committed May 16, 2023
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  3. udpates needed to pass taux and tauxy to wave

    Mariana Vertenstein committed May 16, 2023
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  4. fixed compile bugs

    Mariana Vertenstein committed May 16, 2023
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  5. fixed compile bugs

    Mariana Vertenstein committed May 16, 2023
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Commits on May 17, 2023

  1. Merge pull request ESCOMP#382 from mvertens/feature/theorywaves

    add new optional mapping of taux and tauy from ocean to wave
    jedwards4b authored May 17, 2023
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Commits on May 18, 2023

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  2. expand description

    jedwards4b committed May 18, 2023
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Commits on May 19, 2023

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  3. remove CESMCOUPLED cppdef

    jedwards4b committed May 19, 2023
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  5. rework based on pr review

    jedwards4b committed May 19, 2023
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  6. fix yaml syntax

    jedwards4b committed May 19, 2023
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  7. fix ext versions

    jedwards4b committed May 19, 2023
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  8. fix ext versions

    jedwards4b committed May 19, 2023
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Commits on May 23, 2023

  1. add ispresent and isset

    jedwards4b committed May 23, 2023
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  3. slight change in logic

    jedwards4b committed May 23, 2023
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Commits on May 24, 2023

  1. get ufs to work w/ ocnalb

    * remove swnet to ocean from custom_nems
    * set optional use of nextswday
    * get med history working w/o aofluxes
    DeniseWorthen committed May 24, 2023
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  2. fix src path for cdeps

    jedwards4b committed May 24, 2023
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  3. Merge pull request ESCOMP#387 from jedwards4b/fix_aoflux_and_swtoocn

    make xgrid default and fix sw flux to mom ocn
    jedwards4b authored May 24, 2023
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  4. cdeps path again

    jedwards4b committed May 24, 2023
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  5. cdeps path again

    jedwards4b committed May 24, 2023
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  7. Merge pull request ESCOMP#386 from jedwards4b/add_check_for_nans_conf…

    …ig_option
    
    Add check for nans config option
    jedwards4b authored May 24, 2023
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Commits on May 26, 2023

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  2. Merge pull request ESCOMP#388 from jedwards4b/revert_aoflux_to_ogrid

    testing indicates we are not yet ready for xgrid
    jedwards4b authored May 26, 2023
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Commits on May 30, 2023

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Commits on May 31, 2023

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Commits on Jun 12, 2023

  1. add configuration options for albedo calcs

    * flux_albav moved to _init
    * use_nextswcday for using clock instead of scalar field
    * min_albedo for setting min albedo used max(min_albedo,....)
    * giving a min_albedo value sets logical use_min_albedo, otherwise
    false and min_albedo=0
    * set mean albdif and albdir via config. If not present, defaults to
    current values
    DeniseWorthen committed Jun 12, 2023
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Commits on Jun 14, 2023

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Commits on Jun 23, 2023

  1. both =0 is not an error

    jedwards4b committed Jun 23, 2023
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Commits on Jul 10, 2023

  1. Merge pull request ESCOMP#392 from jedwards4b/fixforhighpecnt

    both =0 is not an error
    jedwards4b authored Jul 10, 2023
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Commits on Jul 24, 2023

  1. add surface flux rollover

    jedwards4b committed Jul 24, 2023
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Commits on Jul 27, 2023

  1. remove TODOs

    DeniseWorthen committed Jul 27, 2023
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  3. remove TODO

    DeniseWorthen committed Jul 27, 2023
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Commits on Jul 28, 2023

  1. fix the x case

    jedwards4b committed Jul 28, 2023
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Commits on Jul 29, 2023

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Commits on Jul 31, 2023

  1. address comments

    DeniseWorthen committed Jul 31, 2023
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Commits on Aug 1, 2023

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  2. debug workflow

    jedwards4b committed Aug 1, 2023
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  4. remove rof_name

    jedwards4b committed Aug 1, 2023
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Commits on Aug 2, 2023

  1. Merge pull request ESCOMP#397 from jedwards4b/xcase_fix

    fix the x case
    jedwards4b authored Aug 2, 2023
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Commits on Aug 9, 2023

  1. Merge pull request ESCOMP#363 from sjsprecious/add_gpu_gust

    Add new XML variables for flexible controls of GPU configuration
    jedwards4b authored Aug 9, 2023
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Commits on Aug 11, 2023

  1. Merge pull request ESCOMP#395 from DeniseWorthen/feature/fixsw

    implement ocean albedos for UFS
    jedwards4b authored Aug 11, 2023
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  2. Merge pull request ESCOMP#403 from fischer-ncar/logic_length_nag

    Add length to logic format descriptor, needed for nag.
    jedwards4b authored Aug 21, 2023
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Commits on Oct 10, 2023

  1. Merge pull request ESCOMP#411 from DeniseWorthen/feature/emc_updates

    UFS-specific modifications
    jedwards4b authored Oct 10, 2023
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  2. fix hang on abort issue

    jedwards4b committed Oct 10, 2023
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Commits on Oct 11, 2023

  1. Merge pull request ESCOMP#394 from jedwards4b/sfcflxrollover

    add surface flux rollover
    jedwards4b authored Oct 11, 2023
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  2. Merge pull request ESCOMP#412 from jedwards4b/abort_bugfix

    fix hang on abort issue
    jedwards4b authored Oct 11, 2023
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Commits on Oct 12, 2023

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Commits on Oct 13, 2023

  1. Merge pull request ESCOMP#413 from jedwards4b/derecho_priority

    support for job_priority on derecho
    jedwards4b authored Oct 13, 2023
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Commits on Oct 23, 2023

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Commits on Nov 2, 2023

  1. more work for inline

    uturuncoglu committed Nov 2, 2023
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Commits on Nov 6, 2023

  1. Merge pull request ESCOMP#417 from jedwards4b/remove_esmf_logfile_kind

    remove this unused variable
    jedwards4b authored Nov 6, 2023
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  4. Merge pull request ESCOMP#418 from DeniseWorthen/feature/emc_updates

    Rename ufs related coupling modes; replace nems with ufs
    jedwards4b authored Nov 7, 2023
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Commits on Nov 22, 2023

  1. more changes for derecho

    jedwards4b committed Nov 22, 2023
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  1. Merge pull request ESCOMP#419 from jedwards4b/update_testlist

    more changes for derecho
    jedwards4b authored Dec 15, 2023
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  2. Merge pull request ESCOMP#421 from jedwards4b/remove_smp_present

    remove the SMP_PRESENT variable and replace with BUILD_THREADED
    jedwards4b authored Dec 15, 2023
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  1. update github tests

    jedwards4b committed Dec 21, 2023
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  2. fix testing issues

    jedwards4b committed Dec 21, 2023
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  3. fixing tests

    jedwards4b committed Dec 21, 2023
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  5. add check for cam_dev

    jedwards4b committed Dec 21, 2023
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  7. debug tests

    jedwards4b committed Dec 21, 2023
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  8. add submodule command

    jedwards4b committed Dec 21, 2023
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  10. Merge pull request #1 from jedwards4b/gustMods

    Gust mods suggested changes for cam_dev
    megandevlan authored Dec 21, 2023
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  11. Merge pull request ESCOMP#422 from megandevlan/gustMods

    Add convective gust contribution to U10
    jedwards4b authored Dec 21, 2023
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Commits on Dec 22, 2023

  1. Merge pull request ESCOMP#424 from jedwards4b/gust_on_for_camdev

    turn add_gusts on by default for camdev
    jedwards4b authored Dec 22, 2023
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Commits on Dec 27, 2023

  1. For T compsets, only run GLC if med_to_glc is true

    This makes the logic for running GLC consistent with runseq_general.py.
    This change is relevant for the unusual case where a T compset (CISM
    forced by dlnd) is being run with CISM in noevolve mode: in this case,
    we don't want to run CISM, and trying to run CISM leads to incorrect
    behavior in a restart case (which is how this issue was detected).
    
    With this change,
    ERS_D_Ly3.f09_g17_gris4.T1850Gg.derecho_intel.cism-noevolve passes.
    billsacks committed Dec 27, 2023
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Commits on Jan 5, 2024

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Commits on Jan 15, 2024

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  2. update for hafs.mom6

    uturuncoglu committed Jan 19, 2024
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  1. Merge pull request ESCOMP#425 from billsacks/fix_runseq_t_noevolve

    For T compsets, only run GLC if med_to_glc is true
    jedwards4b authored Jan 26, 2024
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Commits on Jan 30, 2024

  1. minor fix - remove trim

    uturuncoglu committed Jan 30, 2024
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  3. fix srt test

    jedwards4b committed Jan 30, 2024
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  4. fix cime checkout

    jedwards4b committed Jan 30, 2024
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  5. turn off tmate

    jedwards4b committed Jan 30, 2024
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  6. fix path

    jedwards4b committed Jan 30, 2024
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Commits on Jan 31, 2024

  1. debug workflow

    jedwards4b committed Jan 31, 2024
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  2. give format a length

    jedwards4b committed Jan 31, 2024
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  3. Merge pull request ESCOMP#420 from uturuncoglu/feature/inline

    CMEPS PR for CDEPS Inline implementation
    jedwards4b authored Jan 31, 2024
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Commits on Feb 1, 2024

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  2. Update ccpp-physics in CMEPS to consider sea surface ocean current in…

    … air-sea flux computation (ESCOMP#107)
    
    
    * Update ufs/ccpp/data/MED_typedefs.meta.
    binli2337 authored and uturuncoglu committed Feb 1, 2024
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  2. Set polemethod = ESMF_POLEMETHOD_NONE for UFS regional hafs.mom6 coup…

    …ling mode
    
    to ensure the regional MOM6 ocean coupling variables being properly remapped to
    the FV3ATM grid (without strange extrapolation). (From @binli2337)
    BinLiu-NOAA committed Feb 5, 2024
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