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22 Open 77 Closed
22 Open 77 Closed
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Issues list

If this is a joke about how Swedes pronounce "w"
#377 opened Apr 2, 2018 by mariogiov
Non-existant variable referenced bug
#374 opened Nov 2, 2017 by b97pla
update bam2fastq.sh using latest libs
#371 opened Jul 14, 2017 by szilvajuhos
@szilvajuhos
For GATK jarfile reliant scripts, set $GATK_HOME as default
#364 opened Mar 21, 2017 by sylvinite
Rewrite everything in Python3
#359 opened Feb 11, 2017 by mariogiov
1
Hire More Americans
#356 opened Dec 6, 2016 by mariogiov
1
Fastq_screen and fastqc overwrites result if fastq files has same name
#348 opened Aug 17, 2016 by parlundin
@vezzi @Galithil
Duplication metrics parsing ignores multiple library preps bug
#340 opened May 9, 2016 by b97pla
No files are synced when you start the NGI pipeline with the -k flag.
#318 opened Jan 26, 2016 by Smeds
Running NGI pipeline with multiple flowcells
#312 opened Oct 29, 2015 by Smeds
1
Changing delivery status when reanalysing sample
#309 opened Aug 19, 2015 by parlundin
Specific versions in the requirements cause conflicts
#306 opened Jul 8, 2015 by b97pla
1
Analysis files from wrong samples removed
#298 opened Jun 12, 2015 by parlundin
5
AttributeError: 'exceptions.KeyError' object has no attribute 'msg'
#294 opened May 27, 2015 by b97pla
3
Analysis deletion should reset Charon status values bug
#292 opened May 19, 2015 by mariogiov
1
Move CharonSession code to the charon repo
#280 opened Apr 25, 2015 by b97pla
Track qc jobs in local jobs database enhancement
#275 opened Apr 13, 2015 by mariogiov
If we can't define a libprep for a seqrun, a sample object with no libpreps will exist
#222 opened Mar 10, 2015 by mariogiov
add "exclude_sample" and "exclude_project" to helper scripts enhancement
#219 opened Mar 10, 2015 by mariogiov
helper script: determine what step Piper is working on enhancement
#194 opened Feb 20, 2015 by mariogiov
3
helper script: reset project statuses enhancement
#155 opened Jan 13, 2015 by mariogiov
1
Validate config file enhancement
#115 opened Nov 14, 2014 by mariogiov
@mariogiov
ProTip! Find all open issues with in progress development work with linked:pr.