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xavanx committed Oct 22, 2020
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Expand Up @@ -18,10 +18,16 @@ Please see the following Google Docs for more detailed information:
## Sample Content

### Synthea FHIR patients
* [sample_covid_fhir_juvenile_patients](sample_covid_fhir_juvenile_patients/): synthetic juvenile (age 0-18) COVID patients created using [synthea](https://github.com/synthetichealth/synthea), in FHIR JSON format
* [sample_covid_fhir_juvenile_patients](sample_covid_fhir_juvenile_patients/): synthetic juvenile (age 0-18) COVID patients created using [synthea](https://github.com/synthetichealth/synthea), in FHIR JSON format. The files were transformed before intake using the script [fhir_transform_bundle.py](fhir_transform_bundle.py).
* [sample_covid_fhir_juvenile_patients_anonymized](sample_covid_fhir_juvenile_patients_anonymized/): the same patients as above, but run through the [FHIR Tools for Anonymization](https://github.com/microsoft/FHIR-Tools-for-Anonymization) using the configuration file [anonymizer-configuration.json](anonymizer-configuration.json)

### Synthea CCDA patients
* [sample_ccda_juvenile_patients/original_ccda](sample_ccda_juvenile_patients/original_ccda): synthetic juvenile (age 0-18) COVID patients created using [synthea](https://github.com/synthetichealth/synthea), in CCDA JSON format
* [sample_ccda_juvenile_patients/converted_to_fhir_json/](sample_ccda_juvenile_patients/converted_to_fhir_json/): FHIR JSON files, created using [FHIR Converter](https://github.com/microsoft/FHIR-Converter) on the original_ccda files
* [sample_ccda_juvenile_patients/anonymized_fhir_json/](sample_ccda_juvenile_patients/anonymized_fhir_json/): the same patients as above, but run through the [FHIR Tools for Anonymization](https://github.com/microsoft/FHIR-Tools-for-Anonymization) using the configuration file [anonymizer-configuration.json](anonymizer-configuration.json)

### simhospital HL7V2 patients
* [sample_hl7v2/original_hl7v2](sample_hl7v2/original_hl7v2): synthetic patients generated using [simhospital](https://github.com/google/simhospital/), in HL7 V2 format
* [sample_hl7v2/converted_fhir_json/](sample_hl7v2/converted_fhir_json/): FHIR JSON files, created using [FHIR Converter](https://github.com/microsoft/FHIR-Converter) on the original_ccda files. The files were modified after conversion to turn the Bundle "transaction" to a "batch" and changing the "POST" requests to "PUT".
* [sample_hl7v2/anonymized_fhir_json/](sample_hl7v2/anonymized_fhir_json/): the same patients as above, but run through the [FHIR Tools for Anonymization](https://github.com/microsoft/FHIR-Tools-for-Anonymization) using the configuration file [anonymizer-configuration.json](anonymizer-configuration.json)

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