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python3.pkgs.scipy: Set HOME to a writeable directory #246152

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python3.pkgs.scipy: Set HOME to a writeable directory #246152

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doronbehar
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May fix darwin build.

Description of changes

See comment at #239969 (comment)

Things done

  • Built on platform(s)
    • x86_64-linux
    • aarch64-linux
    • x86_64-darwin
    • aarch64-darwin
  • For non-Linux: Is sandbox = true set in nix.conf? (See Nix manual)
  • Tested, as applicable:
  • Tested compilation of all packages that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD". Note: all changes have to be committed, also see nixpkgs-review usage
  • Tested basic functionality of all binary files (usually in ./result/bin/)
  • 23.11 Release Notes (or backporting 23.05 Release notes)
    • (Package updates) Added a release notes entry if the change is major or breaking
    • (Module updates) Added a release notes entry if the change is significant
    • (Module addition) Added a release notes entry if adding a new NixOS module
  • Fits CONTRIBUTING.md.

@doronbehar doronbehar mentioned this pull request Jul 30, 2023
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@ofborg ofborg bot requested a review from FRidh July 30, 2023 07:39
@doronbehar
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@ofborg build python3.pkgs.scipy

@doronbehar
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@ofborg build python3.pkgs.scipy

@mweinelt
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Not sure why you think the first commit is required. The second one should target staging-next, where the issues currently appears.

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xsimd-x86_64-darwin> building '/nix/store/x812djr6gwaz3ylpqzv7c8vlhlfifvxp-xsimd-11.1.0.drv'
xsimd-x86_64-darwin> unpacking sources
xsimd-x86_64-darwin> unpacking source archive /nix/store/zzh955ls6ycs8rwj3w50dq8k3vyjc8g0-source
xsimd-x86_64-darwin> source root is source
xsimd-x86_64-darwin> patching sources
xsimd-x86_64-darwin> substituteStream(): WARNING: pattern '${prefix}/@CMAKE_INSTALL_LIBDIR@' doesn't match anything in file 'xsimd.pc.in'
xsimd-x86_64-darwin> configuring
xsimd-x86_64-darwin> fixing cmake files...
xsimd-x86_64-darwin> cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LOCALEDIR=/nix/store/9yq562snidbjpgd4j3gnx1ikps4asm96-xsimd-11.1.0/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/9yq562snidbjpgd4j3gnx1ikps4asm96-xsimd-11.1.0/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/9yq562snidbjpgd4j3gnx1ikps4asm96-xsimd-11.1.0/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/9yq562snidbjpgd4j3gnx1ikps4asm96-xsimd-11.1.0/share/doc/xsimd -DCMAKE_INSTALL_INFODIR=/nix/store/9yq562snidbjpgd4j3gnx1ikps4asm96-xsimd-11.1.0/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/9yq562snidbjpgd4j3gnx1ikps4asm96-xsimd-11.1.0/share/man -DCMAKE_INSTALL_OLDINCLUDEDIR=/nix/store/9yq562snidbjpgd4j3gnx1ikps4asm96-xsimd-11.1.0/include -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/9yq562snidbjpgd4j3gnx1ikps4asm96-xsimd-11.1.0/include -DCMAKE_INSTALL_SBINDIR=/nix/store/9yq562snidbjpgd4j3gnx1ikps4asm96-xsimd-11.1.0/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/9yq562snidbjpgd4j3gnx1ikps4asm96-xsimd-11.1.0/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/9yq562snidbjpgd4j3gnx1ikps4asm96-xsimd-11.1.0/lib -DCMAKE_POLICY_DEFAULT_CMP0025=NEW -DCMAKE_OSX_SYSROOT= -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_STRIP=/nix/store/wnj5203979qy5i69zr9jznc6mncybpap-cctools-binutils-darwin-11.1.0-973.0.1/bin/strip -DCMAKE_RANLIB=/nix/store/21apr3mbmghnkd6zy2axxli2s36js3n8-clang-wrapper-11.1.0/bin/ranlib -DCMAKE_AR=/nix/store/21apr3mbmghnkd6zy2axxli2s36js3n8-clang-wrapper-11.1.0/bin/ar -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++ -DCMAKE_INSTALL_PREFIX=/nix/store/9yq562snidbjpgd4j3gnx1ikps4asm96-xsimd-11.1.0 -DBUILD_TESTS=ON 
xsimd-x86_64-darwin> -- The C compiler identification is Clang 11.1.0
xsimd-x86_64-darwin> -- The CXX compiler identification is Clang 11.1.0
xsimd-x86_64-darwin> -- Detecting C compiler ABI info
xsimd-x86_64-darwin> -- Detecting C compiler ABI info - done
xsimd-x86_64-darwin> -- Check for working C compiler: /nix/store/21apr3mbmghnkd6zy2axxli2s36js3n8-clang-wrapper-11.1.0/bin/clang - skipped
xsimd-x86_64-darwin> -- Detecting C compile features
xsimd-x86_64-darwin> -- Detecting C compile features - done
xsimd-x86_64-darwin> -- Detecting CXX compiler ABI info
xsimd-x86_64-darwin> -- Detecting CXX compiler ABI info - done
xsimd-x86_64-darwin> -- Check for working CXX compiler: /nix/store/21apr3mbmghnkd6zy2axxli2s36js3n8-clang-wrapper-11.1.0/bin/clang++ - skipped
xsimd-x86_64-darwin> -- Detecting CXX compile features
xsimd-x86_64-darwin> -- Detecting CXX compile features - done
xsimd-x86_64-darwin> -- xsimd v11.0.1
xsimd-x86_64-darwin> -- Tests build type is Release
xsimd-x86_64-darwin> -- Performing Test HAS_CPP11_FLAG
xsimd-x86_64-darwin> -- Performing Test HAS_CPP11_FLAG - Success
xsimd-x86_64-darwin> CMake Error at test/CMakeLists.txt:187 (message):
xsimd-x86_64-darwin>   
xsimd-x86_64-darwin> 
xsimd-x86_64-darwin>       Cannot find required doctest component.
xsimd-x86_64-darwin>       Please either set CMAKE_PREFIX_PATH to the location of doctestConfig.cmake,
xsimd-x86_64-darwin>       or set DOWNLOAD_DOCTEST=ON
xsimd-x86_64-darwin> 
xsimd-x86_64-darwin> 
xsimd-x86_64-darwin> -- Configuring incomplete, errors occurred!
error: build of '/nix/store/x812djr6gwaz3ylpqzv7c8vlhlfifvxp-xsimd-11.1.0.drv' on 'ssh-ng://[email protected]' failed: builder for '/nix/store/x812djr6gwaz3ylpqzv7c8vlhlfifvxp-xsimd-11.1.0.drv' failed with exit code 1;
       last 10 log lines:
       > -- Performing Test HAS_CPP11_FLAG - Success
       > CMake Error at test/CMakeLists.txt:187 (message):
       >
       >
       >       Cannot find required doctest component.
       >       Please either set CMAKE_PREFIX_PATH to the location of doctestConfig.cmake,
       >       or set DOWNLOAD_DOCTEST=ON
       >
       > 
       > -- Configuring incomplete, errors occurred!
       For full logs, run 'nix log /nix/store/x812djr6gwaz3ylpqzv7c8vlhlfifvxp-xsimd-11.1.0.drv'.
error: builder for '/nix/store/x812djr6gwaz3ylpqzv7c8vlhlfifvxp-xsimd-11.1.0.drv' failed with exit code 1

@ofborg ofborg bot requested a review from tobim July 30, 2023 14:08
@doronbehar
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doronbehar commented Jul 30, 2023 •
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Not sure why you think the first commit is required.

Because of this build log (already linked in #239969 (comment)) from this build, from this evaluation.

@vcunat
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vcunat commented Jul 31, 2023 •
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The second commit does not suffice to fix the build for me. Either way, we need fixes for scipy on staging-next branch already. EDIT: it's also easier to test based on there, as binaries are available.

@doronbehar
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The second commit does not suffice to fix the build for me. Either way, we need fixes for scipy on staging-next branch already. EDIT: it's also easier to test based on there, as binaries are available.

Yes I know, thanks for the help. I guess I'll close this now, as all of the efforts are in #246200 .

@doronbehar doronbehar closed this Jul 31, 2023
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6.topic: python 10.rebuild-darwin: 501+ 10.rebuild-darwin: 1001-2500 10.rebuild-linux: 501+ 10.rebuild-linux: 2501-5000 11.by: package-maintainer
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