Add codespell config + github action, run and fix a good number of typos

.codespellrc

@@ -0,0 +1,6 @@
+[codespell]
+skip = .git,*.pdf,*.svg,yarn.lock,*.min.js,locales
+# ignore words ending with … and some camelcased variables and names
+ignore-regex = \b\S+…\S*|\b(doubleClick|afterAll|PostgresSQL)\b|\bWee, L\.|.*te.*Telugu.*
+# some odd variables
+ignore-words-list = datea,ser,childrens

.github/workflows/codespell.yml

@@ -0,0 +1,22 @@
+---
+name: Codespell
+
+on:
+  push:
+    branches: [master]
+  pull_request:
+    branches: [master]
+
+permissions:
+  contents: read
+
+jobs:
+  codespell:
+    name: Check for spelling errors
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+      - name: Codespell
+        uses: codespell-project/actions-codespell@v2

extensions/cornerstone-dicom-sr/src/index.tsx

@@ -54,7 +54,7 @@ const dicomSRExtension = {
   },
   getCommandsModule,
   getSopClassHandlerModule,
-  // Include dynmically computed values such as toolNames not known till instantiation
+  // Include dynamically computed values such as toolNames not known till instantiation
   getUtilityModule({ servicesManager }) {
     return [
       {

extensions/cornerstone-dicom-sr/src/utils/findMostRecentStructuredReport.js

@@ -44,7 +44,7 @@ const isStructuredReportSeries = series => {
 };
 
 /**
- *  Checkes if series1 is newer than series2
+ *  Checks if series1 is newer than series2
  *
  * @param {Object} series1 - Series Metadata 1
  * @param {Object} series2 - Series Metadata 2

extensions/cornerstone/src/Viewport/Overlays/utils.ts

@@ -75,7 +75,7 @@ export function formatPN(name) {
  * Gets compression type
  *
  * @param {number} imageId
- * @returns {string} comrpession type.
+ * @returns {string} compression type.
  */
 export function getCompression(imageId) {
   const generalImageModule = metaData.get('generalImageModule', imageId) || {};

extensions/cornerstone/src/state.ts

@@ -19,7 +19,7 @@ const setEnabledElement = (viewportId: string, element: HTMLElement, context?: s
 };
 
 /**
- * Grabs the enabled element `dom` reference of an ative viewport.
+ * Grabs the enabled element `dom` reference of an active viewport.
  *
  * @return {HTMLElement} Active viewport element.
  */

extensions/cornerstone/src/utils/getInterleavedFrames.js

@@ -30,7 +30,7 @@ export default function getInterleavedFrames(imageIds) {
     !prefetchQueuedFilled.currentPositionUpToMaximum
   ) {
     if (!prefetchQueuedFilled.currentPositionDownToMinimum) {
-      // Add imageId bellow
+      // Add imageId below
       lowerImageIdIndex--;
       imageIdsToPrefetch.push({
         imageId: imageIds[lowerImageIdIndex],

extensions/default/src/CustomizableContextMenu/ContextMenuController.tsx

@@ -69,8 +69,8 @@ export default class ContextMenuController {
       event,
       content: ContextMenu,
 
-      // This naming is part of hte uiDialogService convention
-      // Clicking outside simpy closes the dialog box.
+      // This naming is part of the uiDialogService convention
+      // Clicking outside simply closes the dialog box.
       onClickOutside: () => this.services.uiDialogService.dismiss({ id: 'context-menu' }),
 
       contentProps: {

extensions/default/src/CustomizableContextMenu/types.ts

@@ -5,7 +5,7 @@ import { Types } from '@ohif/core';
  * menu item for display.
  * An instance of SelectorProps is provided to the selector functions, which
  * return true to include the item or false to exclude it.
- * The point of this is to allow more specific conext menus which hide
+ * The point of this is to allow more specific context menus which hide
  * non-relevant menu options, optimizing the speed of selection of menus
  */
 export interface SelectorProps {
@@ -69,7 +69,7 @@ export interface MenuItem {
   // or more importantly, if the delegating subMenu will be included.
   selector?: (props: SelectorProps) => boolean;
 
-  /** Adapts the item by filling in additional properties as requried */
+  /** Adapts the item by filling in additional properties as required */
   adaptItem?: (item: MenuItem, props: ContextMenuProps) => UIMenuItem;
 
   /** List of commands to run when this item's action is taken. */

extensions/default/src/DicomWebDataSource/index.js

@@ -343,7 +343,7 @@ function createDicomWebApi(dicomWebConfig, userAuthenticationService) {
       const addRetrieveBulkData = instance => {
         const naturalized = naturalizeDataset(instance);
 
-        // if we konw the server doesn't use bulkDataURI, then don't
+        // if we know the server doesn't use bulkDataURI, then don't
         if (!dicomWebConfig.bulkDataURI?.enabled) {
           return naturalized;
         }

extensions/default/src/DicomWebDataSource/retrieveStudyMetadata.js

@@ -9,7 +9,7 @@ const StudyMetaDataPromises = new Map();
  *
  * @param {Object} server Object with server configuration parameters
  * @param {string} StudyInstanceUID The UID of the Study to be retrieved
- * @param {boolean} enabledStudyLazyLoad Whether the study metadata should be loaded asynchronusly.
+ * @param {boolean} enabledStudyLazyLoad Whether the study metadata should be loaded asynchronously.
  * @param {function} storeInstancesCallback A callback used to store the retrieved instance metadata.
  * @param {Object} [filters] - Object containing filters to be applied on retrieve metadata process
  * @param {string} [filter.seriesInstanceUID] - series instance uid to filter results against

extensions/default/src/Panels/PanelMeasurementTable.tsx

@@ -99,7 +99,7 @@ export default function PanelMeasurementTable({
           ? 'Research Derived Series' // default
           : promptResult.value; // provided value
 
-      // Re-use an existing series having the same series description to avoid
+      // Reuse an existing series having the same series description to avoid
       // creating too many series instances.
       const options = findSRWithSameSeriesDescription(SeriesDescription, displaySetService);
 
@@ -236,7 +236,7 @@ function _getMappedMeasurements(measurementService) {
 
 /**
  * Map the measurements to the display text.
- * Adds finding and site inforamtion to the displayText and/or label,
+ * Adds finding and site information to the displayText and/or label,
  * and provides as 'displayText' and 'label', while providing the original
  * values as baseDisplayText and baseLabel
  */

extensions/default/src/commandsModule.ts

@@ -182,7 +182,7 @@ const commandsModule = ({
           stateSyncReduce;
 
         if (!protocolId) {
-          // Re-use the previous protocol id, and optionally stage
+          // Reuse the previous protocol id, and optionally stage
           protocolId = hpInfo.protocolId;
           if (stageId === undefined && stageIndex === undefined) {
             stageIndex = hpInfo.stageIndex;

extensions/default/src/findViewportsByPosition.ts

@@ -3,7 +3,7 @@ import { StateSyncService } from '@ohif/core';
 /**
  * This find or create viewport is paired with the reduce results from
  * below, and the action of this viewport is to look for previously filled
- * viewports, and to re-use by position id.  If there is no filled viewport,
+ * viewports, and to reuse by position id.  If there is no filled viewport,
  * then one can be re-used from the display set if it isn't going to be displayed.
  * @param hangingProtocolService - bound parameter supplied before using this
  * @param viewportsByPosition - bound parameter supplied before using this

extensions/dicom-microscopy/src/DicomMicroscopySRSopClassHandler.js

@@ -42,7 +42,7 @@ function _getDisplaySetsFromSeries(instances, servicesManager, extensionManager)
   const instance = instances[0];
 
   // TODO ! Consumption of DICOMMicroscopySRSOPClassHandler to a derived dataset or normal dataset?
-  // TOOD -> Easy to swap this to a "non-derived" displaySet, but unfortunately need to put it in a different extension.
+  // TODO -> Easy to swap this to a "non-derived" displaySet, but unfortunately need to put it in a different extension.
   const naturalizedDataset = DicomMetadataStore.getSeries(
     instance.StudyInstanceUID,
     instance.SeriesInstanceUID

extensions/dicom-microscopy/src/components/ViewportOverlay/utils.ts

@@ -78,7 +78,7 @@ export function formatPN(name) {
  * Gets compression type
  *
  * @param {number} imageId
- * @returns {string} comrpession type.
+ * @returns {string} compression type.
  */
 export function getCompression(imageId) {
   const generalImageModule = cornerstone.metaData.get('generalImageModule', imageId) || {};

extensions/dicom-microscopy/src/services/MicroscopyService.ts

@@ -48,7 +48,7 @@ export default class MicroscopyService extends PubSubService {
   }
 
   /**
-   * Cleares all the annotations and managed viewers, setting the manager state
+   * Clears all the annotations and managed viewers, setting the manager state
    * to its initial state
    */
   clear() {
@@ -357,7 +357,7 @@ export default class MicroscopyService extends PubSubService {
 
   /**
    * Removes the given third-party viewer API's object from the managed viewers
-   * and cleares all its event subscriptions
+   * and clears all its event subscriptions
    *
    * @param {Object} viewer Third-party viewer API's object to be removed
    */

extensions/dicom-microscopy/src/tools/viewerManager.js

@@ -109,7 +109,7 @@ class ViewerManager extends PubSubService {
   }
 
   /**
-   * Cleares all the relevant event handlers for the third-party API
+   * Clears all the relevant event handlers for the third-party API
    */
   unregisterEvents() {
     this.container.removeEventListener(ApiEvents.ROI_ADDED, this.onRoiAdded);
@@ -205,7 +205,7 @@ class ViewerManager extends PubSubService {
    * @param {String} label The label of the annotation.
    */
   addRoiGraphicWithLabel(roiGraphic, label) {
-    // NOTE: Dicom Microscopy Viewer will override styles for "Text" evalutations
+    // NOTE: Dicom Microscopy Viewer will override styles for "Text" evaluations
     // to hide all other geometries, we are not going to use its label.
     // if (label) {
     //   if (!roiGraphic.properties) roiGraphic.properties = {};

extensions/dicom-microscopy/src/utils/RoiAnnotation.js

@@ -151,7 +151,7 @@ class RoiAnnotation extends PubSubService {
   /**
    * Returns the geometry type of the annotation concatenated with the label
    * defined for the annotation.
-   * Difference with getDetailedLabel() is that this will return empty string for empy
+   * Difference with getDetailedLabel() is that this will return empty string for empty
    * label.
    *
    * @returns {String} Text with geometry type and label

extensions/dicom-microscopy/src/utils/loadSR.js

@@ -31,7 +31,7 @@ export default async function loadSR(
     // NOTE: When saving Microscopy SR, we are attaching identifier property
     // to each ROI, and when read for display, it is coming in as "TEXT"
     // evaluation.
-    // As the Dicom Microscopy Viewer will override styles for "Text" evalutations
+    // As the Dicom Microscopy Viewer will override styles for "Text" evaluations
     // to hide all other geometries, we are going to manually remove that
     // evaluation item.
     const roi = rois[i];

platform/app/cypress/integration/study-list/OHIFStudyList.spec.js

@@ -1,5 +1,5 @@
 //We are keeping the hardcoded results values for the study list tests
-//this is intended to be running in a controled docker environment with test data.
+//this is intended to be running in a controlled docker environment with test data.
 describe('OHIF Study List', function () {
   context('Desktop resolution', function () {
     beforeEach(function () {

platform/app/cypress/support/aliases.js

@@ -61,7 +61,7 @@ export function initStudyListAliasesOnDesktop() {
   cy.get('[data-cy="study-list-results"] > tr').as('searchResult2');
 
   // We can't use data attributes (e.g. data--cy) for these since
-  // they are using third party libraires (i.e. react-dates, react-select)
+  // they are using third party libraries (i.e. react-dates, react-select)
   cy.get('#date-range-studyDate-start-date').as('studyListStartDate');
   cy.get('#date-range-studyDate-end-date').as('studyListEndDate');
   cy.get('#input-modalities').as('modalities');

platform/app/public/_redirects

@@ -1,6 +1,6 @@
 # Specific to our deploy-preview
 # Our docs are published using CircleCI + GitBook
-# Confgure redirects using netlify.toml
+# Configure redirects using netlify.toml
 
 # Spa
 /* /index.html 200

platform/app/src/__tests__/globalSetup.js

@@ -2,7 +2,7 @@ const _ = require('lodash');
 const originalConsoleError = console.error;
 
 // JSDom's CSS Parser has limited support for certain features
-// This supresses error warnings caused by it
+// This suppresses error warnings caused by it
 console.error = function (msg) {
   if (_.startsWith(msg, 'Error: Could not parse CSS stylesheet')) {
     return;

platform/app/src/appInit.js

@@ -89,7 +89,7 @@ async function appInit(appConfigOrFunc, defaultExtensions, defaultModes) {
 
   const loadedModes = await loadModules([...(appConfig.modes || []), ...defaultModes]);
 
-  // This is the name for the loaded istance object
+  // This is the name for the loaded instance object
   appConfig.loadedModes = [];
   const modesById = new Set();
   for (let i = 0; i < loadedModes.length; i++) {

platform/core/README.md

@@ -42,7 +42,7 @@ implementation][react-viewer].
 
 ### Install
 
-> This library is pre- v1.0. All realeases until a v1.0 have the possibility of
+> This library is pre- v1.0. All releases until a v1.0 have the possibility of
 > introducing breaking changes. Please depend on an "exact" version in your
 > projects to prevent issues caused by loose versioning.
 

platform/core/src/classes/MetadataProvider.js

@@ -498,7 +498,7 @@ const WADO_IMAGE_LOADER_TAGS = {
   OVERLAY_PLANE_MODULE: 'overlayPlaneModule',
   PATIENT_DEMOGRAPHIC_MODULE: 'patientDemographicModule',
 
-  // react-cornerstone-viewport specifc
+  // react-cornerstone-viewport specific
   PATIENT_MODULE: 'patientModule',
   GENERAL_IMAGE_MODULE: 'generalImageModule',
   GENERAL_STUDY_MODULE: 'generalStudyModule',

platform/core/src/services/HangingProtocolService/HangingProtocolService.ts

@@ -362,7 +362,7 @@ export default class HangingProtocolService extends PubSubService {
    * @param params is the dataset to run the hanging protocol on.
    * @param params.activeStudy is the "primary" study to hang  This may or may
    *        not be displayed by the actual viewports.
-   * @param params.studies is the list of studies to hang.  If absent, will re-use the previous set.
+   * @param params.studies is the list of studies to hang.  If absent, will reuse the previous set.
    * @param params.displaySets is the list of display sets associated with
    *        the studies to display in viewports.
    * @param protocol is a specific protocol to apply.

platform/core/src/services/MeasurementService/MeasurementService.ts

@@ -517,7 +517,7 @@ class MeasurementService extends PubSubService {
     };
 
     if (oldMeasurement) {
-      // TODO: Ultimately, each annotation should have a selected flag right from the soure.
+      // TODO: Ultimately, each annotation should have a selected flag right from the source.
       // For now, it is just added in OHIF here and in setMeasurementSelected.
       this.measurements.set(internalUID, newMeasurement);
       if (isUpdate) {

platform/core/src/services/StateSyncService/StateSyncService.ts

@@ -6,7 +6,7 @@ const EVENTS = {};
 type Obj = Record<string, unknown>;
 
 type StateConfig = {
-  /** clearOnModeExit defines state configuraion that is cleared automatically on
+  /** clearOnModeExit defines state configuration that is cleared automatically on
    * exiting a mode.  This clearing occurs after the mode onModeExit,
    * so it is possible to preserve desired state during exit to be restored
    * later.

platform/core/src/services/ToolBarService/ToolbarService.ts

@@ -152,7 +152,7 @@ export default class ToolbarService extends PubSubService {
     //   unsubscribe = commandsManager.runCommand(commandName, commandOptions);
     // }
 
-    // // Storing the unsubscribe for later reseting
+    // // Storing the unsubscribe for later resetting
     // if (unsubscribe && typeof unsubscribe === 'function') {
     //   if (this.unsubscriptions.indexOf(unsubscribe) === -1) {
     //     this.unsubscriptions.push(unsubscribe);

platform/core/src/types/HangingProtocol.ts

@@ -257,7 +257,7 @@ export type ProtocolNotifications = {
  * It is a set of rules about when the protocol can be applied at all,
  * as well as a set of stages that represent indivividual views.
  * Additionally, the display set selectors are used to choose from the existing
- * display sets.  The hanging protcol definition here does NOT allow
+ * display sets.  The hanging protocol definition here does NOT allow
  * redefining the display sets to use, but only selects the views to show.
  */
 export type Protocol = {

platform/core/src/utils/Queue.js

@@ -8,7 +8,7 @@ export default class Queue {
   /**
    * Creates a new "proxy" function associated with the current execution queue
    * instance. When the returned function is invoked, the queue limit is checked
-   * to make sure the limit of scheduled tasks is repected (throwing an
+   * to make sure the limit of scheduled tasks is respected (throwing an
    * exception when the limit has been reached and before calling the original
    * function). The original function is only invoked after all the previously
    * scheduled tasks have finished executing (their returned promises have

platform/core/src/utils/hierarchicalListUtils.js

@@ -36,11 +36,11 @@ function addToList(list, ...values) {
  * once for each leaf-node of the tree. The ancestors of the leaf-node being
  * visited are passed to the callback function along with the leaf-node in
  * the exact same order they appear on the tree (from root to leaf);
- *  @ For example, if the hierachy `a > b > c` appears on the tree ("a" being
+ *  @ For example, if the hierarchy `a > b > c` appears on the tree ("a" being
  *    the root and "c" being the leaf) the callback function will be called as:
  *  callback('a', 'b', 'c');
  * @param {Array} list The hierarchical list to be iterated
- * @param {function} callback The callback which will be exected once for
+ * @param {function} callback The callback which will be executed once for
  *  each leaf-node of the hierarchical list;
  * @returns {Array} Returns the provided list or null for bad arguments;
  */

platform/core/src/utils/objectPath.js

@@ -6,7 +6,7 @@ export class ObjectPath {
    * @param path {String} A string representing the property to be set, e.g. "user.study.series.timepoint".
    * @param value {Any} The value of the property that will be set.
    * @return {Boolean} Returns "true" on success, "false" if any intermediate component of the supplied path
-   * ... is not a valid Object, in which case the property cannot be set. No excpetions are thrown.
+   * ... is not a valid Object, in which case the property cannot be set. No exceptions are thrown.
    */
   static set(object, path, value) {
     let components = ObjectPath.getPathComponents(path),

platform/core/src/utils/progressTrackingUtils.js

@@ -114,7 +114,7 @@ function finish(task) {
 /**
  * Generate a summarized snapshot of the current status of the given task List
  * @param {Object} list The List instance to be scanned
- * @returns {Object} An obeject representing the summarized status of the list
+ * @returns {Object} An object representing the summarized status of the list
  */
 function getOverallProgress(list) {
   const status = createStatus();
@@ -223,7 +223,7 @@ function getTaskByName(list, name) {
  * @param {Object} list The List instance to which the observer will be appended
  * @param {Function} observer The observer (function) that will be executed
  *  every time a change happens within the list
- * @returns {boolean} Returns true on success and false otherewise
+ * @returns {boolean} Returns true on success and false otherwise
  */
 function addObserver(list, observer) {
   if (isList(list) && Array.isArray(list.observers) && typeof observer === 'function') {
@@ -237,7 +237,7 @@ function addObserver(list, observer) {
  * Removes an observer (callback function) from a given List instance
  * @param {Object} list The instance List from which the observer will removed
  * @param {Function} observer The observer function to be removed
- * @returns {boolean} Returns true on success and false otherewise
+ * @returns {boolean} Returns true on success and false otherwise
  */
 function removeObserver(list, observer) {
   if (isList(list) && Array.isArray(list.observers) && list.observers.length > 0) {

platform/core/src/utils/splitComma.ts

@@ -1,4 +1,4 @@
-/** Splits a list of stirngs by commas within the strings */
+/** Splits a list of strings by commas within the strings */
 const splitComma = (strings: string[]): string[] => {
   if (!strings) {
     return null;