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OSU_BMBL

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  1. deepmaps deepmaps Public

    Single-cell biological network inference using a heterogeneous graph transformer

    HTML 64 4

  2. scDEAL scDEAL Public

    Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data

    Jupyter Notebook 46 12

  3. IRIS IRIS Public

    A Shiny web server for interactive visualization and analysis of RNA-seq data

    R 22 8

  4. QUBIC2 QUBIC2 Public

    Forked from maqin2001/qubic2

    A novel biclustering algorithm for analyses of transcriptomic data.

    HTML 17 2

  5. ssread ssread Public

    A single-cell and spatial RNA-seq database for Alzheimer’s Disease

    Vue 17 7

  6. marsgt marsgt Public

    Multi-omics data analysis for rare population inference using single-cell graph transformer

    Jupyter Notebook 16 3

Repositories

Showing 10 of 48 repositories
  • BMBL-analysis-notebooks Public

    A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in single-cell analysis.

    OSU-BMBL/BMBL-analysis-notebooks’s past year of commit activity
    HTML 9 7 0 0 Updated Oct 15, 2024
  • SQUAD Public

    Spatial QUality Assessment and Diagnosis

    OSU-BMBL/SQUAD’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 15, 2024
  • SpaGFT Public Forked from jxLiu-bio/SpaGFT

    Detect

    OSU-BMBL/SpaGFT’s past year of commit activity
    Jupyter Notebook 2 MIT 3 0 0 Updated Aug 29, 2024
  • scDEAL Public

    Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data

    OSU-BMBL/scDEAL’s past year of commit activity
    Jupyter Notebook 46 Apache-2.0 12 15 0 Updated Jul 22, 2024
  • STREAM Public

    STREAM: enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data

    OSU-BMBL/STREAM’s past year of commit activity
    R 0 0 1 0 Updated Jul 18, 2024
  • ssread Public

    A single-cell and spatial RNA-seq database for Alzheimer’s Disease

    OSU-BMBL/ssread’s past year of commit activity
    Vue 17 MIT 7 0 0 Updated Jul 17, 2024
  • Spinal-cord-scRNAseq Public

    Supplementary code for the analyses presented in the manuscript: Microglia coordinate intracellular interactions during spinal cord repair in mice

    OSU-BMBL/Spinal-cord-scRNAseq’s past year of commit activity
    HTML 3 2 0 0 Updated Jul 2, 2024
  • marsgt Public

    Multi-omics data analysis for rare population inference using single-cell graph transformer

    OSU-BMBL/marsgt’s past year of commit activity
    Jupyter Notebook 16 3 3 0 Updated May 18, 2024
  • tesa Public
    OSU-BMBL/tesa’s past year of commit activity
    C 0 1 0 0 Updated Dec 27, 2023
  • scGNN2.0 Public
    OSU-BMBL/scGNN2.0’s past year of commit activity
    Jupyter Notebook 11 MIT 0 4 0 Updated Dec 4, 2023

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