Adding contrasts file to dry-run ci

OpenOmics · Oct 4, 2023 · 11fec98 · 11fec98
1 parent 53c730d
commit 11fec98
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml
@@ -24,7 +24,9 @@ jobs:
         /opt2/.tests/WT_S3_1.fastq.gz /opt2/.tests/WT_S3_2.fastq.gz \
         /opt2/.tests/WT_S3_3.fastq.gz /opt2/.tests/WT_S3_4.fastq.gz \
         /opt2/.tests/WT_S4.fastq.gz /opt2/.tests/WT_S5.fastq.gz \
-        --output /opt2/output --genome hg38_41 --groups /opt2/.tests/groups.tsv \
+        --output /opt2/output --genome hg38_41 \
+        --groups /opt2/.tests/groups.tsv \
+        --contrasts /opt2/.tests/contrasts.tsv \
         --mode local --dry-run"
     - name: View the pipeline config file
       run: |