Updating website with OMP instructions. #142
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| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| name: CODECOV | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-20.04, r: 'release'} | |
| env: | |
| ACTIONS_ALLOW_UNSECURE_COMMANDS: true | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| CODECOV_DEBUG: true | |
| steps: | |
| - uses: actions/checkout@v2 | |
| # Install libomp via Homebrew for macOS | |
| - name: Install libomp on macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install libomp | |
| # Set DYLD_LIBRARY_PATH on macOS | |
| - name: Set DYLD_LIBRARY_PATH for libomp on macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| echo "DYLD_LIBRARY_PATH=$(brew --prefix libomp)/lib" >> $GITHUB_ENV | |
| shell: bash | |
| - uses: r-lib/actions/setup-r@v2-branch | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| - uses: r-lib/actions/setup-pandoc@v2-branch | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: 3.9 | |
| miniconda-version: "latest" | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")') | |
| sudo apt install libharfbuzz-dev | |
| sudo apt install libfribidi-dev | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| shell: Rscript {0} | |
| - name: Fix Conda permissions on macOS (SUDO) | |
| if: runner.os == 'macOS' | |
| run: sudo chown -R $UID $CONDA | |
| - name: Installing text and testing it | |
| run: | | |
| install.packages("devtools") | |
| library(devtools) | |
| devtools::install_github("oscarkjell/text") | |
| text::textrpp_install(prompt = FALSE) | |
| text::textrpp_initialize(textEmbed_test = TRUE) | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| # Ensure OMP_MAX_ACTIVE_LEVELS is set to avoid OpenMP issues | |
| - name: Test coverage | |
| env: | |
| OMP_MAX_ACTIVE_LEVELS: 2 | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| run: covr::codecov(token = Sys.getenv("CODECOV_TOKEN")) | |
| shell: Rscript {0} | |
| # Debugging step to confirm coverage files are generated | |
| - name: List files for debugging | |
| run: ls -R | |
| # Wait to ensure all coverage data is saved | |
| - name: Wait for coverage files to be ready | |
| run: sleep 5 | |
| # Upload coverage to Codecov using Codecov Action for each OS with flags | |
| - name: Upload coverage to Codecov (macOS) | |
| if: runner.os == 'macOS' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| flags: macos | |
| verbose: true | |
| files: "path/to/coverage/file" # Replace with the actual path to coverage files | |
| - name: Upload coverage to Codecov (Windows) | |
| if: runner.os == 'Windows' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| flags: windows | |
| verbose: true | |
| files: "path/to/coverage/file" # Replace with the actual path to coverage files | |
| - name: Upload coverage to Codecov (Ubuntu) | |
| if: runner.os == 'Linux' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| flags: ubuntu | |
| verbose: true | |
| files: "path/to/coverage/file" # Replace with the actual path to coverage files |