Handle case when D*.fill_starts variables are not available in map files #4
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: PnetCDF master branch only | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - github_action | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.jpg' | |
| - '**/*.png' | |
| - 'tests/*' | |
| - 'datasets/*' | |
| pull_request: | |
| branches: master | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.jpg' | |
| - '**/*.png' | |
| - 'tests/*' | |
| - 'datasets/*' | |
| env: | |
| MPICH_VERSION: 4.2.0 | |
| PNETCDF_VERSION: repo | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up dependencies | |
| run: | | |
| set -x | |
| sudo apt-get update | |
| sudo apt-get install automake autoconf libtool libtool-bin m4 | |
| # mpich | |
| # sudo apt-get install mpich | |
| # zlib | |
| sudo apt-get install zlib1g-dev | |
| - name: Build MPICH | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| echo "Install MPICH on ${GITHUB_WORKSPACE}/MPICH" | |
| rm -rf MPICH ; mkdir MPICH ; cd MPICH | |
| # git clone -q https://github.com/pmodels/mpich.git | |
| # cd mpich | |
| # git submodule update --init | |
| # ./autogen.sh | |
| curl -LO https://www.mpich.org/static/downloads/${MPICH_VERSION}/mpich-${MPICH_VERSION}.tar.gz | |
| gzip -dc mpich-${MPICH_VERSION}.tar.gz | tar -xf - | |
| cd mpich-${MPICH_VERSION} | |
| ./configure --prefix=${GITHUB_WORKSPACE}/MPICH \ | |
| --silent \ | |
| --enable-romio \ | |
| --with-file-system=ufs \ | |
| --with-device=ch3:sock \ | |
| --disable-fortran \ | |
| CC=gcc | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 | |
| make -s distclean >> qout 2>&1 | |
| - name: Dump MPICH log file | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cat ${GITHUB_WORKSPACE}/MPICH/mpich-${MPICH_VERSION}/qout | |
| cat ${GITHUB_WORKSPACE}/MPICH/mpich-${MPICH_VERSION}/config.log | |
| - name: Install PnetCDF | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| echo "Install PnetCDF on ${GITHUB_WORKSPACE}/PnetCDF" | |
| rm -rf PnetCDF ; mkdir PnetCDF ; cd PnetCDF | |
| # curl -LO https://parallel-netcdf.github.io/Release/pnetcdf-${PNETCDF_VERSION}.tar.gz | |
| # tar -zxf pnetcdf-${PNETCDF_VERSION}.tar.gz | |
| # cd pnetcdf-${PNETCDF_VERSION} | |
| git clone -q https://github.com/Parallel-NetCDF/PnetCDF.git | |
| cd PnetCDF | |
| autoreconf -i | |
| ./configure --prefix=${GITHUB_WORKSPACE}/PnetCDF \ | |
| --silent \ | |
| --disable-fortran \ | |
| --disable-cxx \ | |
| --disable-shared \ | |
| --with-mpi=${GITHUB_WORKSPACE}/MPICH | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 | |
| make -s distclean >> qout 2>&1 | |
| - name: Dump PnetCDF log file | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cat ${GITHUB_WORKSPACE}/PnetCDF/pnetcdf-${PNETCDF_VERSION}/qout | |
| cat ${GITHUB_WORKSPACE}/PnetCDF/pnetcdf-${PNETCDF_VERSION}/config.log | |
| - name: Build and check E3SM_IO with PnetCDF only | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf ./test_output | |
| autoreconf -i | |
| ./configure --with-pnetcdf=${GITHUB_WORKSPACE}/PnetCDF \ | |
| --with-mpi=${GITHUB_WORKSPACE}/MPICH \ | |
| CFLAGS=-fno-var-tracking-assignments \ | |
| CXXFLAGS=-fno-var-tracking-assignments | |
| make -j 8 | |
| make check | |
| - name: Dump log files if E3SM_IO with PnetCDF-only test failed | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat test.sh.log utils/*.log | |
| - name: Test E3SM_IO all APIs -- parallel runs | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| make ptest | |
| - name: Test make distcheck | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| make distcheck DISTCHECK_CONFIGURE_FLAGS="--with-pnetcdf=${GITHUB_WORKSPACE}/PnetCDF --with-mpi=${GITHUB_WORKSPACE}/MPICH CFLAGS=-fno-var-tracking-assignments CXXFLAGS=-fno-var-tracking-assignments" | |
| make distclean | |