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@PennChopMicrobiomeProgram

PennChopMicrobiomeProgram

Bioinformatics software for microbiome science

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  1. adonisplus adonisplus Public

    R 2 2

  2. mirix mirix Public

    Quantify the susceptibility of a bacterial community to an antibiotic.

    R 2 1

  3. dnabc dnabc Public

    Identify DNA barcodes in high-throughput sequencing data files

    Python 6

  4. unassigner unassigner Public

    Type strain identification for 16S reads

    Python 4 4

Repositories

Showing 10 of 26 repositories
  • SampleRegistry Public

    Web application to keep track of samples sequenced

    PennChopMicrobiomeProgram/SampleRegistry’s past year of commit activity
    Python 0 3 5 0 Updated Oct 9, 2024
  • unassigner Public

    Type strain identification for 16S reads

    PennChopMicrobiomeProgram/unassigner’s past year of commit activity
    Python 4 4 9 0 Updated Oct 8, 2024
  • CHOP_metadata_checker Public
    PennChopMicrobiomeProgram/CHOP_metadata_checker’s past year of commit activity
    HTML 0 3 10 1 Updated Oct 8, 2024
  • PCMP_ITS_pipeline Public
    PennChopMicrobiomeProgram/PCMP_ITS_pipeline’s past year of commit activity
    Python 0 1 1 1 Updated Sep 25, 2024
  • mirix Public

    Quantify the susceptibility of a bacterial community to an antibiotic.

    PennChopMicrobiomeProgram/mirix’s past year of commit activity
    R 2 1 1 1 Updated Jul 18, 2024
  • whatbacteria Public

    Database of bacterial phenotypes and antibiotic susceptibility

    PennChopMicrobiomeProgram/whatbacteria’s past year of commit activity
    R 0 0 0 0 Updated Jun 26, 2024
  • dnabc Public

    Identify DNA barcodes in high-throughput sequencing data files

    PennChopMicrobiomeProgram/dnabc’s past year of commit activity
    Python 0 GPL-2.0 6 0 0 Updated Jun 25, 2024
  • wfrcwf Public
    PennChopMicrobiomeProgram/wfrcwf’s past year of commit activity
    Python 0 0 0 0 Updated Jun 18, 2024
  • primertrim Public

    Trim primers from reads

    PennChopMicrobiomeProgram/primertrim’s past year of commit activity
    Python 1 0 0 1 Updated Jun 5, 2024
  • 16S_QIIME2 Public template Forked from junglee0713/16S_QIIME2

    Snakemake based 16S QIIME2 pipeline

    PennChopMicrobiomeProgram/16S_QIIME2’s past year of commit activity
    Python 1 7 0 1 Updated May 17, 2024
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