high-perf-bio paper edition, v3

This release was created to demonstrate the product functionality at the time of publication of the third scientific article.

Summary of changes compared to v2:

• Bash scripts to install and remove high-perf-bio dependencies, and also to update the toolkit itself. Rewritten installation/removal instructions in the README.
• Non-MongoDB tool for counting rows of tables located in different dirs.
• @streamlit GUI improvements.
• Simplification of INFO structure in db-VCF.
• Option in the count tool to discard array unfolding.

ATTENTION: I strongly recommend using in practice the current master branch archive.

high-perf-bio paper edition, v2

This release was created to demonstrate the product functionality at the time of publication of the second scientific article.

Summary of changes compared to v1:

• Creation of a graphical interface based on @streamlit. Accompanying refactoring of existing modules and update of README.
• Now the decision to overwrite DB is made through the CLI or GUI, instead of the interactive dialog.
• Single argument for presets in annotators (annotate, dock, ljoin). As for the presets themselves, currently implemented by-location and by-alleles.
• Too long MongoDB query generated by some components is now shortened when outputting to the target meta-string.
• Significant rework of the count tool. Arrays are now being unwinded, plus, it is now possible to work with nested arrays. Support for multiple source collections is reintroduced.
• README update to reflect @mongodb 6.0 release.

ATTENTION: I strongly recommend using in practice the current master branch archive.

high-perf-bio paper edition, v1

This release was created to demonstrate the product functionality at the time of publication of the first scientific article.

ATTENTION: I strongly recommend using in practice the current master branch archive.