document

RGLab · Nov 26, 2023 · 37a7a89 · 37a7a89
1 parent 06b9c22
commit 37a7a89
Show file tree

Hide file tree

Showing 8 changed files with 256 additions and 16 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -1,5 +1,24 @@
 # Generated by roxygen2: do not edit by hand
 
+export(cytoexperiment)
+export(gate_tail)
+export(gate_tautstring)
+export(gs_to_sce)
+export(gsexperiment)
+export(gslist_clone)
+export(gstreeexperiment)
+export(print.logicle)
+export(readFCSPar)
+export(sce_to_gs)
+export(tailgate)
+export(tautString)
+export(tautStringGate)
+export(tautstring)
+export(tmix2DGate)
+exportClasses(cytoexperiment)
+exportClasses(gsexperiment)
+exportMethods(densityplot)
+exportMethods(keyword)
 import(data.table)
 import(flowCore)
 import(flowWorkspace)

diff --git a/R/tautString.R b/R/tautString.R
@@ -78,10 +78,6 @@ gate_tautstring <- function(fr, channel, gate_range = NULL, min = NULL, max = NU
   }
   return(filters)
 }
-#' @templateVar old tautStringGate
-#' @templateVar new gate_tautstring
-#' @template template-depr_pkg
-NULL
 
 #'@export
 tautStringGate <- function(fr, channel, gate_range = NULL, min = NULL, max = NULL, filterId = ""){

diff --git a/man/densityplot-GatingHierarchy-character-method.Rd b/man/densityplot-GatingHierarchy-character-method.Rd
diff --git a/man/gate_tail.Rd b/man/gate_tail.Rd
diff --git a/man/gate_tautstring.Rd b/man/gate_tautstring.Rd
diff --git a/man/clone-GatingSetList-method.Rd → man/gslist_clone.Rd b/man/clone-GatingSetList-method.Rd → man/gslist_clone.Rd
diff --git a/...getKeywords-GatingSet-character-method.Rd → man/keyword-GatingSet-character-method.Rd b/...getKeywords-GatingSet-character-method.Rd → man/keyword-GatingSet-character-method.Rd
diff --git a/man/sce_to_gs.Rd b/man/sce_to_gs.Rd