fix: print the sample key instead of dictionary contents in non-exist…

…ing reference error log
RIVM-bioinformatics · May 3, 2023 · f8c7a12 · f8c7a12
1 parent a5b56e5
commit f8c7a12
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/ViroConstrictor/parser.py b/ViroConstrictor/parser.py
@@ -153,7 +153,7 @@ def _check_sample_properties(self, sampleinfo: dict[Hashable, Any]) -> None:
                 if reffile := sample.get("REFERENCE"):
                     if not os.path.isfile(reffile):
                         log.error(
-                            f"[bold red]The given reference fasta file for sample '{sample}' does not exist. Please check the reference fasta and try again. Exiting...[/bold red]"
+                            f"[bold red]The given reference fasta file for sample '{item}' does not exist. Please check the reference fasta and try again. Exiting...[/bold red]"
                         )
                         sys.exit(1)
                     reference_files.add(reffile)