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Added LF to ancestry_pipeline Dockerfile to trigger build
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ngaddis committed Oct 30, 2023
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1 change: 1 addition & 0 deletions ancestry_pipeline/v1.0/Dockerfile
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Expand Up @@ -94,3 +94,4 @@ RUN wget -O phase3_orig.psam "https://rti-common.s3.us-east-1.amazonaws.com/ance
WORKDIR /data

ENTRYPOINT [ "/opt/entrypoint.sh" ]

7 changes: 6 additions & 1 deletion ancestry_pipeline/v1.0/README.md
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Expand Up @@ -6,11 +6,16 @@ docker run
```
</details>


<details>
<summary>Build instructions</summary>

# Prior to build, generate new presigned URLs for reference files in S3 using following code:
``` shell
aws s3 presign s3://rti-common/ancestry/smartpca_mahal_pipeline/all_phase3_unique_grch37_dbsnp_b153_ld_pruned.bed --expires-in 172800
aws s3 presign s3://rti-common/ancestry/smartpca_mahal_pipeline/all_phase3_unique_grch37_dbsnp_b153_ld_pruned.bim --expires-in 172800
aws s3 presign s3://rti-common/ancestry/smartpca_mahal_pipeline/all_phase3_unique_grch37_dbsnp_b153_ld_pruned.fam --expires-in 172800
aws s3 presign s3://rti-common/ancestry/smartpca_mahal_pipeline/1000g_variants.tsv --expires-in 172800
aws s3 presign s3://rti-common/ancestry/smartpca_mahal_pipeline/phase3_orig.psam --expires-in 172800
```
```
</details>

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