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Update unzip_extract_stats.R
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edit spacing - to get push to Docker Hub to work.
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jaamarks authored Dec 12, 2023
1 parent 3d92981 commit 8b96bb8
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion multiqc_extract/v1.0/unzip_extract_stats.R
Original file line number Diff line number Diff line change
Expand Up @@ -130,9 +130,9 @@ for (zip_file in zip_files){
###############################
# WRITE/APPEND TO CSV
###############################

output_data <- c(max_row + 1,zip_file, sample_name, total_sequences, read_length, max_per_seq_qual, per_base_seq_qual, seq_dup_level, per_base_n_content)
column_names <- c("row_number","zip_file","sample_name","total_sequences","read_length","max_per_sequence_quality_scores","per_base_seq","sd_per_base_seq","sequence_duplication_levels","sd_sequence_duplication_levels","average_per_base_n_content","sd_per_base_n_content")


row <- data.frame(matrix(ncol = length(column_names), nrow=0))
colnames(row) <- column_names
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