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Updated pre-signed URLs for ancestry pipeline
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ngaddis committed Jan 16, 2024
1 parent 1f44364 commit df8062b
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions ancestry_pipeline/v1.0/Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -74,11 +74,11 @@ RUN R -e "install.packages('optparse',dependencies=TRUE, repos='http://cran.rstu
RUN mkdir /data
RUN mkdir /data/.ref
WORKDIR /data/.ref
RUN wget -O all_phase3_unique_grch37_dbsnp_b153_ld_pruned.bed "https://rti-common.s3.us-east-1.amazonaws.com/ancestry/smartpca_mahal_pipeline/all_phase3_unique_grch37_dbsnp_b153_ld_pruned.bed?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAV4MGIV2ZNAT4GLK2%2F20240116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240116T194102Z&X-Amz-Expires=8640&X-Amz-SignedHeaders=host&X-Amz-Signature=f16bb4e8ac36834a34bfcd3303e606e3bd8f381e4c87899eef168f1a09cfdb42"
RUN wget -O all_phase3_unique_grch37_dbsnp_b153_ld_pruned.bim "https://rti-common.s3.us-east-1.amazonaws.com/ancestry/smartpca_mahal_pipeline/all_phase3_unique_grch37_dbsnp_b153_ld_pruned.bim?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAV4MGIV2ZNAT4GLK2%2F20240116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240116T194102Z&X-Amz-Expires=8640&X-Amz-SignedHeaders=host&X-Amz-Signature=e5a2f666195589fba2af471e111a6c8665fc04fe08ad65704424294614ba2aca"
RUN wget -O all_phase3_unique_grch37_dbsnp_b153_ld_pruned.fam "https://rti-common.s3.us-east-1.amazonaws.com/ancestry/smartpca_mahal_pipeline/all_phase3_unique_grch37_dbsnp_b153_ld_pruned.fam?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAV4MGIV2ZNAT4GLK2%2F20240116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240116T194103Z&X-Amz-Expires=8640&X-Amz-SignedHeaders=host&X-Amz-Signature=9bd33823d1cb74b2bdb4910812fdd2ebb87071480a3b1c96e99ca9fa909e59e8"
RUN wget -O 1000g_variants.tsv "https://rti-common.s3.us-east-1.amazonaws.com/ancestry/smartpca_mahal_pipeline/1000g_variants.tsv?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAV4MGIV2ZNAT4GLK2%2F20240116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240116T194104Z&X-Amz-Expires=8640&X-Amz-SignedHeaders=host&X-Amz-Signature=2cc06becf5c747d61ccc6f8e4262677b9eaa295622f6890e93e581de464a9a90"
RUN wget -O phase3_orig.psam "https://rti-common.s3.us-east-1.amazonaws.com/ancestry/smartpca_mahal_pipeline/phase3_orig.psam?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAV4MGIV2ZNAT4GLK2%2F20240116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240116T194103Z&X-Amz-Expires=8640&X-Amz-SignedHeaders=host&X-Amz-Signature=71215f12b7d7ad2577c91c1ea227bd8c92e139e28b5d5c77f1f1fc203215a8ec"
RUN wget -O all_phase3_unique_grch37_dbsnp_b153_ld_pruned.bed "https://rti-common.s3.us-east-1.amazonaws.com/ancestry/smartpca_mahal_pipeline/all_phase3_unique_grch37_dbsnp_b153_ld_pruned.bed?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAV4MGIV2ZNAT4GLK2%2F20240116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240116T194454Z&X-Amz-Expires=8640&X-Amz-SignedHeaders=host&X-Amz-Signature=4e1d35f5cf1a974d6519f8bf2d0b10ddf1058de4b0edbe539a9114bd11484f18"
RUN wget -O all_phase3_unique_grch37_dbsnp_b153_ld_pruned.bim "https://rti-common.s3.us-east-1.amazonaws.com/ancestry/smartpca_mahal_pipeline/all_phase3_unique_grch37_dbsnp_b153_ld_pruned.bim?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAV4MGIV2ZNAT4GLK2%2F20240116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240116T194455Z&X-Amz-Expires=8640&X-Amz-SignedHeaders=host&X-Amz-Signature=b640c40d591b95b81748a960faf89c4a14f2402760d119d6a0e260854fdd5306"
RUN wget -O all_phase3_unique_grch37_dbsnp_b153_ld_pruned.fam "https://rti-common.s3.us-east-1.amazonaws.com/ancestry/smartpca_mahal_pipeline/all_phase3_unique_grch37_dbsnp_b153_ld_pruned.fam?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAV4MGIV2ZNAT4GLK2%2F20240116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240116T194455Z&X-Amz-Expires=8640&X-Amz-SignedHeaders=host&X-Amz-Signature=a48ddfc0865df40133e5e5ec9be62c036ac5bca343a138791cd18220f932773e"
RUN wget -O 1000g_variants.tsv "https://rti-common.s3.us-east-1.amazonaws.com/ancestry/smartpca_mahal_pipeline/1000g_variants.tsv?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAV4MGIV2ZNAT4GLK2%2F20240116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240116T194456Z&X-Amz-Expires=8640&X-Amz-SignedHeaders=host&X-Amz-Signature=f34cdfdbeac23635960c7de7ec42d080d5ee04b4d63b2129a584bcbd1df46b0e"
RUN wget -O phase3_orig.psam "https://rti-common.s3.us-east-1.amazonaws.com/ancestry/smartpca_mahal_pipeline/phase3_orig.psam?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAV4MGIV2ZNAT4GLK2%2F20240116%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240116T194456Z&X-Amz-Expires=8640&X-Amz-SignedHeaders=host&X-Amz-Signature=db9c37e896413b41679253136c7951c0d476091751644eb75ad0e2781c0a738e"

#### Install custom scripts ####
# Add scripts
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