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How to use heatmap?
1. Open nanoborb apps.
2. Open a slide.
- Select
File
on the tool bar(top-left) and click onOpen
menu and openslide selection window
.
- On
slide selection window
, select a slide to open. User can useFiles of Types
select to filter slide type.
3. Select a data JSON File.
- click on
heatmap
icon to openheatmap selection window
.
- On
heatmap selection window
, select a Heatmap JSON file to open Heatmap for the current silde.
There are 6 tools on the toolbar at the top-left of the viewer.
From left to right, the tools are Heatmap controls
, Magnifier
, Measurement Tool
, Side-by-side Viewer
, Annotation Viewer
, and Bug Report
.
1. Heatmap Control
-
Mode: there are Binal and Gradient modes.
In Binal mode, a user can threshold properties by the combination.
In Gradient mode, a user can threshold only one property. -
Thresholding Properties:
Using the range sliders to control the range of threshold for each property. -
Opacity:
The heat slider controls the opacity of the heatmap layer.
The cover slider controls the opacity of the cover layer.
Layers Structure:
top
-------------- heatmap layer
-------------- cover layer
-------------- slide layer
bottom
2. Magnifier
3. Measurement Tool
4. Side-By-Side Viewer
5. Annotation
6. Bug Report
###TODO screen record
Sample Heatmap JSON File
Sample Slide
Heatmap Data Description
Heatmap Data Converter # convert quip2.0 heatmap to quip3.0 heatmap.