iASIS Lung Cancer exploration service

1. About

Service for the exploration of the entities related to Lung Cancer in iASIS KG.

2. Usage

Setup the variable with the iASiS endpoint

export IASISKG_ENDPOINT=http://node2.research.tib.eu:7171/sparql

Execute

./run_iasis_lc_exploration_service.sh

Examples of calls to service:

Example 1 Getting publications:

curl -H "Content-Type: application/json" -d '{ "comorbidities" : ["C0242339", "C0020538", "C0149871"], "biomarkers":["C0034802","C1332080","C0812281"], "tumorType":["C0152013"], "drugGroups":["C0002771", "C0003232"], "drugs":["C0000979","C0028978"],"oncologicalTreatments":["C0021083", "C3665472", "C3899317", "C0596087", "C0034619", "C0543467"],"immunotherapyDrugs":["C3657270", "C3658706", "C1367202"],"tkiDrugs":["C1135135", "C2987648", "C4058811", "C1122962", "C3853921", "C3818721"], "chemotherapyDrugs":["C0008838", "C4082227", "C0771375", "C0015133", "C0079083", "C0045093", "C0144576", "C0210657", "C0078257"]}' -X POST http://localhost:5000/lc_exploration?"type=publications&limit=4" --output example_output6.txt

Example 2 Getting publications, side-effects, and drug-interactions:

curl -H "Content-Type: application/json" -d '{ "comorbidities" : ["C0242339", "C0020538", "C0149871"], "biomarkers":["C0034802","C1332080","C0812281"], "tumorType":["C0152013"], "drugGroups":["C0002771", "C0003232"], "drugs":["C0000979","C0028978"],"oncologicalTreatments":["C0021083", "C3665472", "C3899317", "C0596087", "C0034619", "C0543467"],"immunotherapyDrugs":["C3657270", "C3658706", "C1367202"],"tkiDrugs":["C1135135", "C2987648", "C4058811", "C1122962", "C3853921", "C3818721"], "chemotherapyDrugs":["C0008838", "C4082227", "C0771375", "C0015133", "C0079083", "C0045093", "C0144576", "C0210657", "C0078257"]}' -X POST http://localhost:5000/lc_exploration?"type=publications,sideEffects,drugInteractions&limit=4" --output example_output7.txt