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Failed while install this repo #606

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LT1st opened this issue Jan 22, 2024 · 6 comments
Open

Failed while install this repo #606

LT1st opened this issue Jan 22, 2024 · 6 comments

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@LT1st
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LT1st commented Jan 22, 2024

By using both .sh and by hand method, I failed in setup.py anyway. Could you be so kind to check which is the key point?

Compiling toolkit/utils/region.pyx because it changed.
[1/1] Cythonizing toolkit/utils/region.pyx
/home/spai/anaconda3/envs/pysot_self/lib/python3.7/site-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /home/spai/code/attack/pysot/toolkit/utils/region.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)

Error compiling Cython file:
------------------------------------------------------------
...

from libc.stdlib cimport malloc, free
from libc.stdio cimport sprintf
from libc.string cimport strlen

cimport c_region
        ^
------------------------------------------------------------

toolkit/utils/region.pyx:11:8: 'c_region.pxd' not found

Error compiling Cython file:
------------------------------------------------------------
...
    RECTANGEL
    POLYGON
    MASK

cdef class RegionBounds:
    cdef c_region.region_bounds* _c_region_bounds
         ^
------------------------------------------------------------

toolkit/utils/region.pyx:21:9: 'region_bounds' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
        self._c_region_bounds.bottom = bottom
        self._c_region_bounds.left = left
        self._c_region_bounds.right = right

cdef class Rectangle:
    cdef c_region.region_rectangle* _c_region_rectangle
         ^
------------------------------------------------------------

toolkit/utils/region.pyx:58:9: 'region_rectangle' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
                self._c_region_rectangle.y,
                self._c_region_rectangle.width,
                self._c_region_rectangle.height)

cdef class Polygon:
    cdef c_region.region_polygon* _c_region_polygon
         ^
------------------------------------------------------------

toolkit/utils/region.pyx:99:9: 'region_polygon' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
    else:
        pno_bounds = RegionBounds(-float("inf"), float("inf"),
                                  -float("inf"), float("inf"))
    cdef float only1 = 0
    cdef float only2 = 0
    cdef c_region.region_polygon* c_polygon1 = polygon1_._c_region_polygon
         ^
------------------------------------------------------------

toolkit/utils/region.pyx:182:9: 'region_polygon' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
        pno_bounds = RegionBounds(-float("inf"), float("inf"),
                                  -float("inf"), float("inf"))
    cdef float only1 = 0
    cdef float only2 = 0
    cdef c_region.region_polygon* c_polygon1 = polygon1_._c_region_polygon
    cdef c_region.region_polygon* c_polygon2 = polygon2_._c_region_polygon
         ^
------------------------------------------------------------

toolkit/utils/region.pyx:183:9: 'region_polygon' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
                                  -float("inf"), float("inf"))
    cdef float only1 = 0
    cdef float only2 = 0
    cdef c_region.region_polygon* c_polygon1 = polygon1_._c_region_polygon
    cdef c_region.region_polygon* c_polygon2 = polygon2_._c_region_polygon
    cdef c_region.region_bounds no_bounds = pno_bounds._c_region_bounds[0] # deference
         ^
------------------------------------------------------------

toolkit/utils/region.pyx:184:9: 'region_bounds' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...

cdef class RegionBounds:
    cdef c_region.region_bounds* _c_region_bounds

    def __cinit__(self):
        self._c_region_bounds = <c_region.region_bounds*>malloc(
                                 ^
------------------------------------------------------------

toolkit/utils/region.pyx:24:33: 'region_bounds' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
cdef class RegionBounds:
    cdef c_region.region_bounds* _c_region_bounds

    def __cinit__(self):
        self._c_region_bounds = <c_region.region_bounds*>malloc(
                sizeof(c_region.region_bounds))
                                ^
------------------------------------------------------------

toolkit/utils/region.pyx:25:32: cimported module has no attribute 'region_bounds'

Error compiling Cython file:
------------------------------------------------------------
...

cdef class Rectangle:
    cdef c_region.region_rectangle* _c_region_rectangle

    def __cinit__(self):
        self._c_region_rectangle = <c_region.region_rectangle*>malloc(
                                    ^
------------------------------------------------------------

toolkit/utils/region.pyx:61:36: 'region_rectangle' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
cdef class Rectangle:
    cdef c_region.region_rectangle* _c_region_rectangle

    def __cinit__(self):
        self._c_region_rectangle = <c_region.region_rectangle*>malloc(
                sizeof(c_region.region_rectangle))
                                ^
------------------------------------------------------------

toolkit/utils/region.pyx:62:32: cimported module has no attribute 'region_rectangle'

Error compiling Cython file:
------------------------------------------------------------
...
        args:
            points: tuple of point
            points = ((1, 1), (10, 10))
        """
        num = len(points) // 2
        self._c_region_polygon = <c_region.region_polygon*>malloc(
                                  ^
------------------------------------------------------------

toolkit/utils/region.pyx:108:34: 'region_polygon' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
            points: tuple of point
            points = ((1, 1), (10, 10))
        """
        num = len(points) // 2
        self._c_region_polygon = <c_region.region_polygon*>malloc(
                sizeof(c_region.region_polygon))
                                ^
------------------------------------------------------------

toolkit/utils/region.pyx:109:32: cimported module has no attribute 'region_polygon'

Error compiling Cython file:
------------------------------------------------------------
...
                sizeof(c_region.region_polygon))
        if not self._c_region_polygon:
            self._c_region_polygon = NULL
            raise MemoryError()
        self._c_region_polygon.count = num
        self._c_region_polygon.x = <float*>malloc(sizeof(float) * num)
                                   ^
------------------------------------------------------------

toolkit/utils/region.pyx:114:35: Cannot convert 'float *' to Python object

Error compiling Cython file:
------------------------------------------------------------
...
            raise MemoryError()
        self._c_region_polygon.count = num
        self._c_region_polygon.x = <float*>malloc(sizeof(float) * num)
        if not self._c_region_polygon.x:
            raise MemoryError()
        self._c_region_polygon.y = <float*>malloc(sizeof(float) * num)
                                   ^
------------------------------------------------------------

toolkit/utils/region.pyx:117:35: Cannot convert 'float *' to Python object

Error compiling Cython file:
------------------------------------------------------------
...
            self._c_region_polygon.x[i] = points[i*2]
            self._c_region_polygon.y[i] = points[i*2+1]

    def __dealloc__(self):
        if self._c_region_polygon is not NULL:
            if self._c_region_polygon.x is not NULL:
                                        ^
------------------------------------------------------------

toolkit/utils/region.pyx:127:40: Invalid types for 'is_not' (Python object, void *)

Error compiling Cython file:
------------------------------------------------------------
...
            self._c_region_polygon.y[i] = points[i*2+1]

    def __dealloc__(self):
        if self._c_region_polygon is not NULL:
            if self._c_region_polygon.x is not NULL:
                free(self._c_region_polygon.x)
                                           ^
------------------------------------------------------------

toolkit/utils/region.pyx:128:43: Cannot convert Python object to 'void *'

Error compiling Cython file:
------------------------------------------------------------
...

    def __dealloc__(self):
        if self._c_region_polygon is not NULL:
            if self._c_region_polygon.x is not NULL:
                free(self._c_region_polygon.x)
                self._c_region_polygon.x = NULL
                                           ^
------------------------------------------------------------

toolkit/utils/region.pyx:129:43: Cannot convert 'void *' to Python object

Error compiling Cython file:
------------------------------------------------------------
...
    def __dealloc__(self):
        if self._c_region_polygon is not NULL:
            if self._c_region_polygon.x is not NULL:
                free(self._c_region_polygon.x)
                self._c_region_polygon.x = NULL
            if self._c_region_polygon.y is not NULL:
                                        ^
------------------------------------------------------------

toolkit/utils/region.pyx:130:40: Invalid types for 'is_not' (Python object, void *)

Error compiling Cython file:
------------------------------------------------------------
...
        if self._c_region_polygon is not NULL:
            if self._c_region_polygon.x is not NULL:
                free(self._c_region_polygon.x)
                self._c_region_polygon.x = NULL
            if self._c_region_polygon.y is not NULL:
                free(self._c_region_polygon.y)
                                           ^
------------------------------------------------------------

toolkit/utils/region.pyx:131:43: Cannot convert Python object to 'void *'

Error compiling Cython file:
------------------------------------------------------------
...
            if self._c_region_polygon.x is not NULL:
                free(self._c_region_polygon.x)
                self._c_region_polygon.x = NULL
            if self._c_region_polygon.y is not NULL:
                free(self._c_region_polygon.y)
                self._c_region_polygon.y = NULL
                                           ^
------------------------------------------------------------

toolkit/utils/region.pyx:132:43: Cannot convert 'void *' to Python object

Error compiling Cython file:
------------------------------------------------------------
...
    cdef float only1 = 0
    cdef float only2 = 0
    cdef c_region.region_polygon* c_polygon1 = polygon1_._c_region_polygon
    cdef c_region.region_polygon* c_polygon2 = polygon2_._c_region_polygon
    cdef c_region.region_bounds no_bounds = pno_bounds._c_region_bounds[0] # deference
    return c_region.compute_polygon_overlap(c_polygon1,
                   ^
------------------------------------------------------------

toolkit/utils/region.pyx:185:19: cimported module has no attribute 'compute_polygon_overlap'
Traceback (most recent call last):
  File "setup.py", line 21, in <module>
    ext_modules=cythonize(ext_modules)
  File "/home/spai/anaconda3/envs/pysot_self/lib/python3.7/site-packages/Cython/Build/Dependencies.py", line 1154, in cythonize
    cythonize_one(*args)
  File "/home/spai/anaconda3/envs/pysot_self/lib/python3.7/site-packages/Cython/Build/Dependencies.py", line 1321, in cythonize_one
    raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: toolkit/utils/region.pyx

# packages in environment at /home/spai/anaconda3/envs/pysot_self:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
_openmp_mutex             5.1                       1_gnu    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
blas                      1.0                         mkl    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
brotlipy                  0.7.0           py37h27cfd23_1003    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
ca-certificates           2023.12.12           h06a4308_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
certifi                   2022.12.7        py37h06a4308_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
cffi                      1.15.1           py37h5eee18b_3    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
charset-normalizer        2.0.4              pyhd3eb1b0_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
colorama                  0.4.6                    pypi_0    pypi
cryptography              39.0.1           py37h9ce1e76_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
cuda90                    1.0                  h6433d27_0    pytorch
cudatoolkit               9.0                  h13b8566_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
cudnn                     7.6.5                 cuda9.0_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
cycler                    0.11.0                   pypi_0    pypi
cython                    3.0.8                    pypi_0    pypi
flit-core                 3.6.0              pyhd3eb1b0_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
fonttools                 4.38.0                   pypi_0    pypi
freetype                  2.12.1               h4a9f257_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
giflib                    5.2.1                h5eee18b_3    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
idna                      3.4              py37h06a4308_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
intel-openmp              2023.1.0         hdb19cb5_46306    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
jpeg                      9e                   h5eee18b_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
kiwisolver                1.4.5                    pypi_0    pypi
lcms2                     2.12                 h3be6417_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
ld_impl_linux-64          2.38                 h1181459_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
lerc                      3.0                  h295c915_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
libblas                   3.9.0           1_h86c2bf4_netlib    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libcblas                  3.9.0           5_h92ddd45_netlib    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libdeflate                1.17                 h5eee18b_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
libffi                    3.4.4                h6a678d5_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
libgcc-ng                 11.2.0               h1234567_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
libgfortran-ng            11.2.0               h00389a5_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
libgfortran5              11.2.0               h1234567_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
libgomp                   11.2.0               h1234567_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
liblapack                 3.9.0           5_h92ddd45_netlib    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
libopenblas               0.3.21               h043d6bf_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
libpng                    1.6.39               h5eee18b_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
libstdcxx-ng              11.2.0               h1234567_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
libtiff                   4.5.1                h6a678d5_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
libwebp                   1.2.4                h11a3e52_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
libwebp-base              1.2.4                h5eee18b_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
lz4-c                     1.9.4                h6a678d5_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
matplotlib                3.5.3                    pypi_0    pypi
mkl                       2018.0.3                      1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
nccl                      1.3.5                 cuda9.0_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
ncurses                   6.4                  h6a678d5_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
ninja                     1.10.2               h06a4308_5    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
ninja-base                1.10.2               hd09550d_5    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
numpy                     1.21.6           py37h976b520_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
opencv-python             4.9.0.80                 pypi_0    pypi
openssl                   1.1.1w               h7f8727e_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
packaging                 23.2                     pypi_0    pypi
pillow                    9.4.0            py37h6a678d5_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
pip                       23.3.2             pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
protobuf                  4.24.4                   pypi_0    pypi
pycparser                 2.21               pyhd3eb1b0_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
pyopenssl                 23.0.0           py37h06a4308_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
pyparsing                 3.1.1                    pypi_0    pypi
pysocks                   1.7.1                    py37_1    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
python                    3.7.16               h7a1cb2a_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
python-dateutil           2.8.2                    pypi_0    pypi
python_abi                3.7                     2_cp37m    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
pytorch                   0.4.1            py37ha74772b_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
pyyaml                    6.0.1                    pypi_0    pypi
readline                  8.2                  h5eee18b_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
requests                  2.28.1           py37h06a4308_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
setuptools                69.0.3             pyhd8ed1ab_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
six                       1.16.0                   pypi_0    pypi
sqlite                    3.41.2               h5eee18b_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
tensorboardx              2.6.2.2                  pypi_0    pypi
tk                        8.6.12               h1ccaba5_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
torchvision               0.13.1          cpu_py37h164cc8f_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
tqdm                      4.66.1                   pypi_0    pypi
typing_extensions         4.4.0            py37h06a4308_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
urllib3                   1.26.14          py37h06a4308_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
wheel                     0.38.4           py37h06a4308_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
xz                        5.4.5                h5eee18b_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
yacs                      0.1.8                    pypi_0    pypi
zlib                      1.2.13               h5eee18b_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
zstd                      1.5.5                hc292b87_0    https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
@baikundb
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using pip install Cython==0.29.21 instead, this repo use cython2. just go back to old version

@baikundb
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Package Version

certifi 2022.12.7
colorama 0.4.6
cycler 0.11.0
Cython 0.29.21
fonttools 4.38.0
kiwisolver 1.4.5
matplotlib 3.5.3
numpy 1.21.6
opencv-python 4.9.0.80
packaging 23.2
Pillow 9.5.0
pip 22.3.1
protobuf 4.24.4
pyparsing 3.1.1
python-dateutil 2.8.2
PyYAML 6.0.1
setuptools 65.6.3
six 1.16.0
tensorboardX 2.6.2.2
torch 1.13.1+cu116
tqdm 4.66.1
typing_extensions 4.7.1
wheel 0.38.4
wincertstore 0.2
yacs 0.1.8

@LT1st
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Author

LT1st commented Jan 23, 2024

using pip install Cython==0.29.21 instead, this repo use cython2. just go back to old version

Thanks a lot! It works for me. The installation is done.

But I face another issue here:

RuntimeError: CuDNN error: CUDNN_STATUS_SUCCESS

I double checked the version in conda env, and are sure about the version of cuda, torch and cudnn are fit. Any suggestion for that?

@XuM007
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XuM007 commented Feb 14, 2024

using pip install Cython==0.29.21 instead, this repo use cython2. just go back to old version

Thanks a lot! It works for me. The installation is done.

But I face another issue here:

RuntimeError: CuDNN error: CUDNN_STATUS_SUCCESS

I double checked the version in conda env, and are sure about the version of cuda, torch and cudnn are fit. Any suggestion for that?

Hello, I encountered the same problem, have you solved it?

@LT1st
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LT1st commented Feb 22, 2024 via email

@zptang1210
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I upgraded torch version and it worked. I used 1.10.1 instead.

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@LT1st @zptang1210 @baikundb @XuM007