Update DCA Template Config File #38
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # ------------------------------------------------------------------------------ | |
| # When the main branch is updated, trigger a workflow in sage-bionetworks/data_curator_config | |
| # to generate templates from the data modell in this repo. | |
| # | |
| # You need to generate a secret in your github repo "PAT_GITHUB" containing | |
| # a personal access token with repo scope. The default secrets.GITHUB_TOKEN | |
| # will not work. | |
| # ------------------------------------------------------------------------------ | |
| name: dcc_config_repo_dispatch | |
| # Can specify other branches or triggers for this workflow | |
| # https://docs.github.com/en/actions/using-workflows/events-that-trigger-workflows | |
| on: | |
| pull_request: | |
| types: | |
| - closed # requires if_merged job below to run only during a merged PR | |
| workflow_dispatch: | |
| # Edit these variables for your data model | |
| env: | |
| DATA_MODEL: https://raw.githubusercontent.com/Sage-Bionetworks/data-models/main/example.model.jsonld | |
| # Can be NULL to generate templates for all schemas. Or a space-delimited string of schemas | |
| DATA_TYPES: "Biospecimen BulkRNA-seqAssay Patient" | |
| COMMUNITY_DIR: demo | |
| concurrency: | |
| # cancel the current running workflow from the same branch, PR when a new workflow is triggered | |
| # when the trigger is not a PR but a push, it will use the commit sha to generate the concurrency group | |
| # {{ github.workflow }}: the workflow name is used to generate the concurrency group. This allows you to have more than one workflows | |
| # {{ github.ref_type }}: the type of Git ref object created in the repository. Can be either branch or tag | |
| # {{ github.sha }}: full commit sha | |
| # credit: https://github.com/Sage-Bionetworks-Workflows/sagetasks/blob/main/.github/workflows/ci.yml | |
| group: >- | |
| ${{ github.workflow }}-${{ github.ref_type }}- | |
| ${{ github.sha }} | |
| cancel-in-progress: true | |
| jobs: | |
| repo_dispatch: | |
| # Extra logic to check PR is merged, see https://docs.github.com/en/actions/using-workflows/events-that-trigger-workflows#running-your-pull_request-workflow-when-a-pull-request-merges | |
| if: github.event.pull_request.merged == true || github.event != 'pull_request' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Repo dispatch to data_curator_config event generate-templates | |
| run: | | |
| curl -X POST \ | |
| -H "Authorization: token ${{ secrets.PAT_GITHUB }}" \ | |
| -H "Accept: application/vnd.github+json" \ | |
| https://api.github.com/repos/Sage-Bionetworks/data_curator_config/dispatches \ | |
| -d '{"event_type": "generate_templates", "client_payload": { "data_model": "${{ env.DATA_MODEL }}", "data_types": "${{ env.DATA_TYPES }}", "community_dir": "${{ env.COMMUNITY_DIR }}"}}' |