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Remove mock component from data model #37

Merged
merged 8 commits into from
Oct 2, 2024
Merged

Remove mock component from data model #37

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127911c
Add data_model_labels parameter to template creation workflow
afwillia Mar 4, 2024
5e82bc9
Merge branch 'Sage-Bionetworks:main' into main
afwillia Mar 4, 2024
f66f5dc
Merge branch 'main' of https://github.com/afwillia/data-models
afwillia Oct 2, 2024
c7f676d
add filenameExists rule
afwillia Oct 2, 2024
4864422
Add MockFilename
afwillia Oct 2, 2024
26e2e9b
Fix merge conflict
afwillia Oct 2, 2024
de8c6ef
Merge branch 'Sage-Bionetworks:main' into main
afwillia Oct 2, 2024
7faec63
remove mockcomponent
afwillia Oct 2, 2024
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3 changes: 1 addition & 2 deletions example.model.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ Biospecimen,,,"Sample ID, Patient ID, Tissue Status, Component",,FALSE,DataType,
Sample ID,,,,,TRUE,DataProperty,,,
Tissue Status,,"Healthy, Malignant",,,TRUE,DataProperty,,,
Bulk RNA-seq Assay,,,"Filename, Sample ID, File Format, Component",,FALSE,DataType,Biospecimen,,
Filename,,,,,TRUE,DataProperty,,,#MockFilename filenameExists^^
Filename,,,,,TRUE,DataProperty,,,#Filename filenameExists^^
File Format,,"FASTQ, BAM, CRAM, CSV/TSV",,,TRUE,DataProperty,,,
BAM,,,Genome Build,,FALSE,ValidValue,,,
CRAM,,,"Genome Build, Genome FASTA",,FALSE,ValidValue,,,
Expand All @@ -36,4 +36,3 @@ Check Match Exactly values,,,,,TRUE,DataProperty,,,matchExactlyOne MockComponent
Check Ages,,,,,TRUE,DataProperty,,,protectAges
Check Unique,,,,,TRUE,DataProperty,,,unique error
Check Range,,,,,TRUE,DataProperty,,,inRange 50 100 error
MockFilename,,,"Component, Filename",,FALSE,DataType,,,
27 changes: 1 addition & 26 deletions example.model.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -612,7 +612,7 @@
"sms:displayName": "Filename",
"sms:required": "sms:true",
"sms:validationRules": {
"MockFilename": "filenameExists"
"Filename": "filenameExists"
}
},
{
Expand Down Expand Up @@ -1351,31 +1351,6 @@
"sms:displayName": "gh",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:MockFilename",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "MockFilename",
"rdfs:subClassOf": [
{
"@id": "bts:DataType"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "MockFilename",
"sms:required": "sms:false",
"sms:requiresDependency": [
{
"@id": "bts:Component"
},
{
"@id": "bts:Filename"
}
],
"sms:validationRules": []
}
],
"@id": "http://schema.biothings.io/#0.1"
Expand Down
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